nipreps sdcflows issues

nipreps / sdcflows

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

https://www.nipreps.org/sdcflows

Apache License 2.0

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issues

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Task: Push packages from GHA, enable OIDC (trusted publishing)

#471 effigies opened 1 week ago
0
build(deps): bump codecov/codecov-action from 4 to 5

#470 dependabot[bot] opened 1 week ago
1
Update niworkflows in requirements.txt

#469 miltoncamacho opened 3 weeks ago
1
CLI run requires mriqc to be installed

#468 miltoncamacho opened 3 weeks ago
3
FieldmapReportlet assumes inputs are in same orientation

#467 mgxd opened 1 month ago
1
`mri_robust_template` missing in docker

#466 bpinsard opened 1 month ago
0
[FIX] force_fmapless on top of self-correcting pepolar bold

#465 bpinsard opened 1 month ago
3
TEST: Clear registry consistently to avoid order dependency

#464 effigies closed 1 month ago
1
ENH: Dilate fmap and bold masks during coregistration

#463 psadil closed 1 month ago
3
ENH: Allow Jacobian correction to be toggled on/off

#462 effigies closed 1 month ago
2
Dilate fmap and epi masks before coregistration

#461 psadil closed 1 month ago
6
doc: Plot correct workflow in init_syn_preprocessing_wf docstring

#460 effigies closed 1 month ago
0
CI: Drop CircleCI, using GHA only

#459 effigies closed 1 month ago
2
FIX: Normalize BIDS-URIs to subject-relative

#458 effigies closed 1 month ago
3
fix: Only fit high-frequency spline for SyN-SDC

#457 effigies closed 2 months ago
2
BIDS URIs failing for at least some datasets

#456 effigies closed 1 month ago
1
[B0FieldIdentifier] repeated between subjects makes fmriprep crash

#455 suxpert opened 3 months ago
2
Repair 3dQwarp workflow

#454 psadil opened 4 months ago
4
FIX: Revision of the B-Spline fitting code

#453 oesteban closed 4 months ago
2
ENH: Improve plots in jupyter notebook

#452 oesteban closed 5 months ago
0
[FIX] [DOC] ValueError in notebook output.

#450 mathdugre closed 5 months ago
1
[FIX] Building Docker image on ARM64 devices

#449 mathdugre closed 5 months ago
1
Some cells of the notebook not rendering

#448 oesteban closed 4 months ago
1
inconsistent contrast in PEB/PEPOLAR

#447 mitchellxh opened 5 months ago
1
refactor: Notebook plots personalised

#446 jmarabotto closed 5 months ago
2
REL: 2.9.0

#445 effigies closed 5 months ago
1
RF: Add sanitized_id field to FieldmapEstimation

#444 effigies closed 5 months ago
5
Revert "Remove non-alphanumeric characters from workflow names and output entities"

#443 effigies closed 6 months ago
0
NodeExecutionError triggered when using `UniformGrid` and images with slightly different affines

#442 psadil closed 5 months ago
3
`init_3dQwarp_wf` expects input that is missing from inputnode

#441 psadil opened 6 months ago
3
DOC: Un-mock the already-imported numpy

#440 effigies closed 6 months ago
0
docs-building jobs failing

#439 tsalo closed 6 months ago
0
Draft MEDIC dynamic distortion correction method (second attempt)

#438 tsalo opened 6 months ago
7
Replace non-word/special characters from B0FieldIdentifier/Source tags

#437 marcelzwiers closed 7 months ago
2
FIX: Update suffix only when finding related fieldmap files

#436 marcelzwiers closed 7 months ago
0
Draft MEDIC dynamic distortion correction method

#435 tsalo closed 6 months ago
4
Remove non-alphanumeric characters from workflow names and output entities

#434 tsalo closed 6 months ago
5
test(deps): Test against scipy 1.12

#433 effigies closed 5 months ago
0
build(deps): bump codecov/codecov-action from 3 to 4

#432 dependabot[bot] closed 9 months ago
2
FIX: Remove unused ANTs parameter that was removed in 2.4.1

#431 lalalavi closed 9 months ago
11
ds004024 misalignment of BOLD and fieldmap

#430 effigies opened 10 months ago
9
build(deps): bump actions/cache from 3 to 4

#429 dependabot[bot] closed 10 months ago
1
CI: Move PR doc build into main doc build, add texlive to build dependencies

#428 effigies closed 10 months ago
0
FIX: Documentation was not building because of warnings issued from nbsphinx's output

#427 oesteban closed 10 months ago
0
FIX: Enable fieldmapless by default in CLI

#426 effigies closed 10 months ago
0
FIX: New test ``test_wrangler_URIs`` had the wrong oracle

#425 oesteban closed 10 months ago
0
TEST: Use less confusing function name for testing CLI with --dry-run

#424 oesteban closed 10 months ago
0
REL: 2.8.0

#423 effigies closed 10 months ago
0
Excessive SyN runtime

#422 effigies opened 10 months ago
0
FIX: Derive field from SyN displacements using EPI affine

#421 effigies closed 10 months ago
2