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Have a stricter distinction between utility code and model-specific code.
Suggestion:
- cpp
- framework
- utility (stl utilities, eigen utilities, parameter sets, io header etc.)
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Hi folks, I've been testing an analysis recently that needs simulation of natural neutral nucleotide mutations across the genome with MAT output. I discovered to my dismay that the genome seems to be …
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**Submitting author:** @giovannic (Giovanni Charles)
**Repository:** https://github.com/mrc-ide/individual
**Version:** v0.1.1
**Editor:** @mikldk
**Reviewers:** @seabbs, @strengejacke, @SteRoe
**Man…
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Hi,
I've been trying to reuse the example code, MPNNLSTM, GCLSTM, and GConvLSTM with my own dataset. My MSE errors are around .2 but the models do not return correct target values. When I run the exa…
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@kathsherratt, my understanding is that you started something like this?
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Per @martinjankowiak suggestion, after we marginalize discrete latent variables to run HMC and get posterior for continuous variables, it would be nice to have a utility to get posterior samples for d…
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The package fails to build as `vf_help_text.o` is listed in `OBJ_FILES` but there isn't a corresponding `.cpp` file in `vfgen/src`. Removing `vf_help_text.o` from `OBJ_FILES` allows compilation to con…
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Many ecological and epidemiological models are defined in terms of discrete time. Would it be possible to have these explicitly supported in ModelingToolkit? There are two routes to this, as fair as I…
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I built a SIR epidemiological model using the graphical interface. Everything looked good, I could simulate my model. I decided to save what I have done in a .irt file. I quit irritator and then try t…
duboz updated
3 years ago
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Take a look at [this paper](https://arxiv.org/abs/2006.12077), in which they use [kappa language](https://kappalanguage.org/) to specify epidemiological models (rather than cellular models). The repo …