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NicolaDM
/
phastSim
fast sequence evolution simulation for SARS-CoV-2 and similar
GNU General Public License v3.0
16
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5
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Fix genome tree bug
#20
joel-winterton
closed
1 month ago
2
phastSim output (mat.pb file) missing reference identifier
#19
shlokanegi
closed
1 year ago
3
Issues with mutationsTSV input
#18
jmcbroome
opened
1 year ago
2
"Vanilla" approach (--noHierarchy) took a longer runtime than “Hierarchical” approach (without --noHierarchy) in simulations with discrete rates (--categoryRates)
#17
trongnhanuit
closed
2 years ago
5
phastSim 0.0.3 crashed when simulating Indels
#16
trongnhanuit
closed
2 years ago
4
--rootGenomeLength doesn't work on phastSim 0.0.3
#15
trongnhanuit
closed
2 years ago
1
Missing phastsim9
#14
ppgardne
opened
2 years ago
0
Verbose output causes error and issues with mutation type output
#13
jmcbroome
closed
2 years ago
4
KeyError: 'R'
#12
ppgardne
opened
2 years ago
2
Add ete3 parsing mode option
#11
jmcbroome
closed
2 years ago
0
Allowing user to set ete3 parsing mode
#10
jmcbroome
closed
2 years ago
4
corrected imports for uploading new version to pypi
#9
willboulton
closed
2 years ago
0
speed up infinite iterator sequences using itertools.chain
#8
NicolaDM
closed
3 years ago
0
fixed bug nicola spotted with --scale
#7
NicolaDM
closed
3 years ago
0
fix merging issue 2
#6
NicolaDM
closed
3 years ago
0
Merge pull request #1 from willboulton/indels
#5
NicolaDM
closed
3 years ago
0
Indels
#4
willboulton
closed
3 years ago
0
README update
#3
conorwalker
closed
3 years ago
0
Added the reference and tree file to be installed with the package
#2
W-L
closed
3 years ago
0
Creating a package that can be installed with pip
#1
W-L
closed
3 years ago
0