-
**Describe the bug**
I have a label-studio instance running locally on linux with docker-compose. Whenever I try to upgrade the label-studio version from 1.9.0 to any newer version, the web UI for la…
-
-
Looking at the modified base tags section there are a limited number of modified bases found in the specifications page. At nanopore we are working on a number of other modified bases and wondering wh…
-
According to the current definition, a "Sequence Collection" is "a **set** of reference sequences", however, I believe that in order to be useful, this should be changed to an "**ordered set** of refe…
-
First of all, kudos for creating such an awesome framework for genomic visualisations!
I have seen all the genome browsers since 2000 appear and tried all of them (I even wrote my own in 2000 - a poo…
-
I will continue the discussion here, until or if @keean can get Github to restore the thread. Luckily I still have a copy of the deleted #35 thread loaded, so I can copy and paste from it. If the orig…
-
We need to confirm the final contents of the string to digest. Right now, I think we had settled on these elements:
## contents
- name (*e.g.* `chr1`)
- length
- topology
- sequence digest (re…
-
Dear devs. The GFF v3 produced by the pipeline does not include STOP codons in the coordinates of the CDS and fails parsing (or shows wrong) by some downstream tools and genome browsers. I am guess…
-
We need to begin adding functional annotation information to the genome browsers. The most straightforward way to do this is via the annotation gff3 file, prior to creating the apollo/jbrowse files. …
-
Hello, I am trying to use GCsnap to analyze a clustered .clan file that I prepared using MMseq2 and clan from MPI bioinformatics toolkit. The example test worked fine, but now I get stuck on step 2: F…