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NAL-i5K
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Organism_Onboarding
A workflow to make organism onboarding pipeline easy to handle as an I/O pipeline
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We will need to update the link path is /app gets deprecated
#153
ChrisChilders-USDA
opened
2 months ago
0
Bump requests from 2.25.1 to 2.32.0
#152
dependabot[bot]
opened
6 months ago
0
Bump idna from 2.10 to 3.7
#151
dependabot[bot]
opened
7 months ago
0
Add new config to trackList.json
#150
mpoelchau
closed
5 months ago
1
Issue 144
#149
mpoelchau
closed
1 year ago
0
Gff release number
#148
mpoelchau
closed
1 year ago
0
Investigate effect of NCBI assembly page deprecation
#147
mpoelchau
closed
1 year ago
2
Better support for mtDNA
#146
mpoelchau
opened
1 year ago
1
Gff release number is not a number anymore
#145
mpoelchau
closed
1 year ago
0
bigwig_symlink-gaps step in createsymlink.cwl needs to be optional
#144
mpoelchau
closed
1 year ago
10
Update yml file
#143
mpoelchau
closed
1 year ago
1
Add functional annotations to gff files
#142
ZhiXuanLai
closed
2 years ago
0
Update final-workflow.cwl to add functional annotations to gff file
#141
mpoelchau
closed
1 year ago
15
Add functional annotation directory symlink
#140
ZhiXuanLai
closed
2 years ago
0
Update yml files to reflect new data downloads directory
#139
mpoelchau
closed
2 years ago
0
Make step scaffold_gzip in CreateSymlink-workflow.cwl conditional
#138
ZhiXuanLai
closed
2 years ago
1
Update yml files to change the data downloads directory
#137
mpoelchau
closed
2 years ago
1
Copy the working_files directory to the other three servers
#136
ZhiXuanLai
closed
2 years ago
1
Merge localdata
#135
ZhiXuanLai
closed
2 years ago
1
resuscitate genomics-workspace.cwl?
#134
mpoelchau
opened
2 years ago
2
add functional annotation directory to create-symlink.cwl
#133
mpoelchau
closed
2 years ago
2
make gzip step in create-symlink.cwl optional
#132
mpoelchau
closed
2 years ago
1
Move working_files directory over during movedata workflow
#131
mpoelchau
closed
2 years ago
4
Change CWL version of all files to v1.2
#130
ZhiXuanLai
closed
2 years ago
0
Merge no-gaps
#129
ZhiXuanLai
closed
2 years ago
1
Generate new release
#128
mpoelchau
closed
2 years ago
1
Add symlink singularity
#127
mpoelchau
closed
2 years ago
0
Add symlink to analyses directory in jbrowse directory according to issue #121
#126
ZhiXuanLai
opened
2 years ago
0
Singularity
#125
mpoelchau
closed
2 years ago
0
No gaps
#124
mpoelchau
closed
2 years ago
0
Merge new fixes from master into singularity branch
#123
mpoelchau
closed
2 years ago
0
Transfer scaffold directory to apollo server
#122
ZhiXuanLai
closed
2 years ago
0
Add symlink to analyses directory in jbrowse directory
#121
mpoelchau
closed
2 years ago
2
Delete automatic URL generation and accession in workflow files
#120
ZhiXuanLai
closed
2 years ago
0
Explore using new NCBI datasets commands for file retrieval instead of wget
#119
mpoelchau
opened
3 years ago
0
Rsync analyses directory to apollo servers
#118
mpoelchau
closed
2 years ago
1
Update linkouts to analysis pages in readme files
#117
mpoelchau
closed
2 years ago
2
Merge updates from master into localdata branch
#116
mpoelchau
opened
3 years ago
0
Merge new fixes from master into singularity branch
#115
mpoelchau
closed
3 years ago
0
merge singularity branch into no-gaps
#114
mpoelchau
closed
3 years ago
0
Singularity
#113
mpoelchau
closed
3 years ago
0
Make CreateOrganism programs executable
#112
mpoelchau
closed
3 years ago
0
Separate createorganism
#111
mpoelchau
closed
3 years ago
1
Bump urllib3 from 1.26.2 to 1.26.5
#110
dependabot[bot]
closed
3 years ago
1
Bump urllib3 from 1.26.2 to 1.26.4
#109
dependabot[bot]
closed
3 years ago
1
Bump lxml from 4.6.2 to 4.6.3
#108
dependabot[bot]
closed
3 years ago
0
Bump urllib3 from 1.26.2 to 1.26.3
#107
dependabot[bot]
closed
3 years ago
1
remove chmod step from movedata workflow
#106
mpoelchau
closed
3 years ago
2
Bump lxml from 4.5.0 to 4.6.2
#105
dependabot[bot]
closed
3 years ago
0
Replace space with underscore for organism argument in Apollo2 create…
#104
mpoelchau
closed
3 years ago
1
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