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NAL-i5K
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Organism_Onboarding
A workflow to make organism onboarding pipeline easy to handle as an I/O pipeline
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adding chmod 755 for files after transfering them
#103
HsiuKangHuang
closed
4 years ago
2
update permissions of moved files
#102
mpoelchau
closed
4 years ago
2
Create branch without flatfile-to-json.cwl
#101
mpoelchau
closed
4 years ago
1
add a new step for creating a symlink to assembly folder
#100
HsiuKangHuang
closed
4 years ago
0
Change flatfile-to-json.cwl to add_NCBI_annotation_track.cwl
#99
mpoelchau
closed
3 years ago
1
Minor fixes to Create symlink workflow
#98
mpoelchau
closed
4 years ago
3
Create documentation for all workflows
#97
mpoelchau
closed
4 years ago
1
Add tripal content
#96
mpoelchau
opened
4 years ago
2
Bump psutil from 5.6.3 to 5.6.6
#95
dependabot[bot]
closed
4 years ago
0
Create symlink
#94
HsiuKangHuang
closed
4 years ago
1
generate readme files for assemblies and gene predictions
#93
mpoelchau
closed
4 years ago
1
improve createorganism.cwl error handling
#92
mpoelchau
closed
4 years ago
2
Apollo2 server fixes
#91
mpoelchau
closed
4 years ago
0
workflow files for adding annotation
#90
HsiuKangHuang
closed
4 years ago
0
modified add-bw-track_gaps and add-bw-track_gc
#89
HsiuKangHuang
closed
4 years ago
0
discuss workflow for processing NCBI Refseq annotations for chado ingest
#88
mpoelchau
closed
2 years ago
1
Set up production workflow
#87
mpoelchau
closed
4 years ago
4
trackList.json post-processing steps in flow_apollo2 aren't working
#86
mpoelchau
closed
4 years ago
1
Add gene page linkouts to Apollo workflow
#85
mpoelchau
closed
2 years ago
0
Change yml
#84
HsiuKangHuang
closed
4 years ago
1
copied directories are still symbolic links
#83
mpoelchau
closed
4 years ago
3
apollo2_create_organism needs dispatch output as input
#82
mpoelchau
closed
4 years ago
2
Add functional annotation pipeline to workflow
#81
mpoelchau
closed
4 years ago
2
Changed PATH in yml and added missing managePy_PATH in workflow.
#80
HsiuKangHuang
closed
4 years ago
1
Updated final-workflow.* to change some path settings
#79
mpoelchau
closed
4 years ago
0
adding description in workflow
#78
HsiuKangHuang
opened
5 years ago
0
Revert "Genomics workspace"
#77
mpoelchau
closed
5 years ago
0
Copy protein and transcript files
#76
mpoelchau
closed
5 years ago
0
Gw fixes
#75
mpoelchau
closed
5 years ago
0
Genomics workspace
#74
HsiuKangHuang
closed
5 years ago
0
Add genomics-workspace workflow
#73
mpoelchau
closed
4 years ago
1
Revise env
#72
HsiuKangHuang
closed
5 years ago
0
Wrapping up my work on Organism Onboarding
#71
r06942072
closed
4 years ago
3
Ver2
#70
r06942072
closed
5 years ago
0
Organism onboarding project
#69
r06942072
closed
4 years ago
2
flow_copy2apollo-dev needs tool for working_files
#68
mpoelchau
closed
5 years ago
3
Add LoadListingRequirement
#67
mpoelchau
closed
5 years ago
2
create new command line tool with add_OGS_track.py
#66
mpoelchau
closed
4 years ago
9
copy2apollo-dev output needs to be createOrganism input
#65
mpoelchau
closed
5 years ago
3
LoadListingRequirement necessary for some tools
#64
mpoelchau
closed
5 years ago
2
Dev 0328
#63
mpoelchau
closed
5 years ago
0
Building Block: add fasta 2 blast
#62
r06942072
closed
5 years ago
0
Workflow: flow_download_others
#61
r06942072
closed
5 years ago
1
Write a linux shell scripts !!
#60
r06942072
closed
5 years ago
0
extra directories generated in flow_copy2data
#59
mpoelchau
closed
5 years ago
2
Unit testing
#58
r06942072
closed
5 years ago
3
Workflow: flow_copy2apollo-dev
#57
r06942072
closed
5 years ago
2
Workflow: flow_verify
#56
r06942072
closed
5 years ago
0
【Nested Workflow】 final-workflow.cwl
#55
r06942072
closed
5 years ago
8
Workflow: flow_setup
#54
r06942072
closed
5 years ago
5
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