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Dear Giotto Developers,
I am opening this issue to ask whether Giotto has/is currently develop a function to transform the coloured spot generated from the clustering on the spat-plot function.
…
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Hello,
It seems that when I attempt to use detectSpatialPatterns on my Giotto object, the function is not detecting my spatial grid, even though the correct name of the grid has been provided to t…
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hi, I reproduce the traning, the response of the model I trained is neither an answer starting with `yes` or `no` when eval mme. Will your model be like this? how can i eval mme?
question:
```
I…
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I am unable to run trendSceek in a fresh conda environment.
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using 'trendsceek' for spatial gene/pattern detection. If used in published research, please cite:
Edsgard, Daniel, Per Johnsson,…
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Dear developer,
I got an error when i run the PCA, it's really odd.
test
The previous steps look alright, I am using my data instead of sample data.
Can you help me with it? Thanks
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Hello,
When running runDWLSDeconv, I get the following error
```
Error in enrich_matrix[, ct_spot_k[m]] : subscript out of bounds
In addition: Warning messages:
1: In sparseMatrix(i = indices[…
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Hi,
Thank you for developing such a wonderful tool. I am trying to run Giotto on my data sets but I ran into an issue when running doLeidenCluster. This is the error I get - any thoughts?
Thanks…
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#### Description
It is worth discussion whether we would like and want to always ensure that our MapperPipelines will be able to take pandas dataframes as inputs directly. There would be potentially …
ulupo updated
4 years ago
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Hi everyone,
I am trying to merge my Visium objects with function "joinGiottoObject".
dataDir
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Hi!
I have been running Giotto on some Visium data, using a script very similar to your [mouse brain vignette](https://rubd.github.io/Giotto_site/articles/mouse_visium_brain_201226.html).
However,…