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Hello,
I've been having some problems with a few runs of our single cell RNAseq data.
We get a high percentage of unmapped reads.
I've checked a couple of potential issues but it doesn't seem to …
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[errorCWLtool.txt](https://github.com/ncbi/pgap/files/10472161/errorCWLtool.txt)
![Screenshot from 2023-01-21 13-27-52](https://user-images.githubusercontent.com/98017313/213866852-ec0cf98c-cdc7-47…
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**Describe the bug**
I installed PGAP and tried running the template first. I used MG37 genome and the code I used is below
` ./pgap.py \
> -n -o MG37 \
> --container-path /scratch/cd3050/pytorch-…
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微博内容精选
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**Describe the bug**
The bash script to train the model does not work because of a Cupy error:
```
(OpenChatKit-Test) user@pc:~/OpenChatKit$ bash training/finetune_GPT-NeoXT-Chat-Base-20B.sh
Trace…
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Hi,
We're trying to run PGAP without the wrapper script because that fits our compute scheme and I'm unable to move past some errors that we're encountering:
We spin up a docker container as nor…
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![image](https://user-images.githubusercontent.com/52486242/195051556-948e3978-f3c9-49a8-87f7-1eb8f475efce.png)
![image](https://user-images.githubusercontent.com/52486242/195051688-38d81016-9bae-40c…
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Hello! First of all, thanks for PGAP. I've tried to run my file and no matter how hard I try I can't. If anyone could advise me I would really appreciate it.
[PGAP_failed.zip](https://github.com/ncbi…
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e.g. may I use multiple gpus for a single worker and split the model between them? Thanks!