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First of all, thanks for the paper and the source code!
I'm using this repository as a baseline code trying to reproduce the result and trying to improving MCMC sampling. You give 2 option to gene…
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@kyleabeauchamp : Would you be OK with us pulling some of your fancy (G)HMC integrators into [`openmmtools.integrators`](http://openmmtools.readthedocs.io/en/latest/integrators.html) from https://gith…
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#### Summary:
Right now the id for each chain will always be the same in the output csv, but they should be different for each output file
#### Description:
Describe the issue as clearly as pos…
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[Marketplace](http://marketplace.xbox.com/en-US/Product/Hitman-HD-Pack/66acd000-77fe-1000-9115-d8025351081c)
Tested on (https://github.com/benvanik/xenia/commit/abf162c0e32889b37461374b1d25ef9b…
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#### Summary:
Regarding the parameters of the dual averaging optimization for the stepsize in the warmup, all parameters can be set by the user except `mu`. For certain models, the initial choice of …
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I bumped into some more shenanigans with `reversediff` and covariance matrices. Generating a vector of numbers using `arraydist`, multiplying that with a matrix from LKJCholesky, and passing it back t…
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Like we have [Stan](http://mc-stan.org/) for Python, R as HMC requires some tuning, so if we use [NUTS](http://andrewgelman.com/2011/11/30/stan-uses-nuts/) (Stan's sampler) which is more computationa…
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**Describe the bug**
```somesy sync``` deletes existing ids from affiliations of authors and contributors.
it also removes: the '@id' from the resource itself, all keys-value pairs that codemeta all…
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Currently when multiple chains are sampled in parallel with `StaticTrajectory`, the different chains may (if I understand correctly) have their own nominal step sizes and jitters, yet the same random …
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I am trying to use ramulator-pim to simulate a PIM device similar to the one you used in the NAPEL paper. In this paper, it is mentioned that ramulator simulates the time and energy of the HMC-PIM dev…