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When I am running the tutorial withe the provided example data, I get a total number of "Number of m/z features" of 19851 and not as written in the tutorial: 9927
Also, I do get much higher intensi…
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Hi @Kawue:
I am running the provim pipeline and goes well through all the operations. But, here, I have a result of the pipeline.
As mentioned in the README file. The workflow_pybasis.py gen…
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METASPACE currently provides no way to get the TIC of individual spectra. The TIC can be very useful for downstream analysis for a number of reasons:
* Normalizing ion images by the TIC often reduces…
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When I run the ImzMLParser to parse a .imzML dataset from METASPACE, I get the error message: list index out of range. The full error message is attached below, could you help on it? Thanks!
```
~\A…
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Hi provim developer:
First of all, thank for developing this awesome tools, it's very useful.
I'a planning to use this software to analyze my MALDI-MSI data sets generated by FT-ICR, which…
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Hi everyone,
I recently had an issue using the MALDIquant package.
Indeed, in the context of my research I have multiple MALDI MSI analysis.
In order to process my data for statistical analys…
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Hi Alan,
I was trying to use this converter to go from grd to imzml using the code below:
C:\Users\tm6\Documents\GitHub\jimzMLConverter\target>java -jar jimzMLConverter-2.1.0.jar imzML -p "X:\Te…
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This is nearing the last issue I will file, promise!
For our data release, we group data files from the same section like so, with the metadata `.tsv` files in the root directory.
#### schema in r…
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Hi:
Thank you for developing this software.
Do you have designed interfaces to software, like Cardinal and MALDIquant.
By the way, an example is really appreciated.
Thank you!
Pe…
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Amazon S3 Glacier is a good candidate https://aws.amazon.com/glacier/faqs/?nc=sn&loc=6