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Helloc @vtraag,
Leiden seems to be built like Louvain, in the sense that in the process of finding the best partition the nodes within a community are merged into a metanode, before performing agai…
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When I load the f_final_loom into a `scanpy.AnnData` object, I get the following error.
`adata.obs.drop(['Embedding','Embeddings_X','Embeddings_Y','RegulonsAUC'],axis=1,inplace=True)`
TypeError: …
clg12 updated
9 months ago
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Preliminary:
- [ ] Define algorithms to implement
- [ ] Write interfaces / classes
- [ ] Write standard test cases
Implement:
- [ ] Disjoint Set (Or Union-Find)
- [ ] Louvain
- [ ] Label …
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**Describe the bug (__must be provided__)**
Syntax parsing is not expected.
**How To Reproduce(__must be provided__)**
```
MATCH p=(n:player)-[]->(m:player) WITH p, size((m)-[]->()) as right_o…
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I would like to visualize a dendrogram from scanpy.pl.heatmap() without the heatmap, grouped by louvain clusters. It would be nice to have the louvain clusters as the x-axis and the y-axis representat…
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Why is the package listed as `python-louvain` but you have to use it with `import community` ?
* It is misleading as people try to do `pip install community`
* It shadows the name of the other `…
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Hello thank you for your work,
I want to signal a problem about the html generated with
```python
Sigma.write_html(
graph=g,
path="../test2.html",
node_size=g.degree,
defau…
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CALL algo.louvain.stream('Account','follow',
{weightProperty:'propertyName', defaultValue:1.0, concurrency:4})
YIELD nodeId, community
cypher like that,you can't do that work in bigger graph wh…
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AFAIK networkx and python-igraph do the same thing, only that python-igraph is faster.
We also need python-igraph anyway for louvain and so on, so maybe it would be good to get rid of networkx.
…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of anndata.
- [X] (optio…