scverse anndata issues - Githubissues

scverse / anndata

Annotated data.

http://anndata.readthedocs.io

BSD 3-Clause "New" or "Revised" License

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issues

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Backport PR #1537: Fix assigning and initializing with h5py datasets

#1547 flying-sheep closed 1 day ago
1
Backport PR #1545 on branch 0.10.x ((fix): don't try to write `pandas` `string` type in `test_scanpy_krumsiek11`)

#1546 meeseeksmachine closed 3 days ago
1
(fix): don't try to write `pandas` `string` type in `test_scanpy_krumsiek11`

#1545 ilan-gold closed 3 days ago
1
Backport PR #1543 on branch 0.10.x ([pre-commit.ci] pre-commit autoupdate)

#1544 meeseeksmachine closed 3 days ago
1
[pre-commit.ci] pre-commit autoupdate

#1543 pre-commit-ci[bot] closed 3 days ago
1
(fix): `pr` number for `gpu` `numpy` version fix

#1542 ilan-gold closed 4 days ago
2
Backport PR #1540 on branch 0.10.x ((fix): upper bound `numpy` only for `gpu`)

#1541 meeseeksmachine closed 3 days ago
1
(fix): upper bound `numpy` only for `gpu`

#1540 ilan-gold closed 4 days ago
1
Gpu failing because of `cp.full` with `np.nan`

#1539 ilan-gold closed 4 days ago
0
Backport PR #1532 on branch 0.10.x ((fix): allow setting X as sparse when X is dense view)

#1538 ilan-gold closed 4 days ago
1
Fix assigning and initializing with h5py datasets

#1537 flying-sheep closed 1 day ago
3
Backport PR #1516: Coerce np.matrix instances to np.ndarray

#1536 flying-sheep closed 1 week ago
1
Backport PR #1534 on branch 0.10.x (Prepare v0.10.8)

#1535 meeseeksmachine closed 1 week ago
1
Prepare v0.10.8

#1534 flying-sheep closed 1 week ago
1
Backport PR #1531: [pre-commit.ci] pre-commit autoupdate

#1533 flying-sheep closed 1 week ago
0
(fix): allow setting `X` as sparse when `X` is dense view

#1532 ilan-gold closed 4 days ago
2
[pre-commit.ci] pre-commit autoupdate

#1531 pre-commit-ci[bot] closed 1 week ago
1
Remove upper version bound on zarr

#1530 flying-sheep opened 1 week ago
1
Backport PR #1514 on branch 0.10.x ((fix): fix for new `scipy.sparse` matrix strings in `sparse_dataset` docstring tests)

#1529 meeseeksmachine closed 1 week ago
1
Fix numpy check

#1528 flying-sheep closed 1 week ago
2
Backport PR #1487: Switch conftest to plugin

#1527 flying-sheep closed 1 week ago
1
Set of categories changes when slicing AnnData, but not when slicing DataFrame

#1526 jacksonloper closed 1 week ago
1
Backport PR #1524: Format sparse_dataset code

#1525 flying-sheep closed 2 weeks ago
1
Format sparse_dataset code

#1524 flying-sheep closed 2 weeks ago
1
Fix sparse dataset 2D slicing

#1523 flying-sheep opened 2 weeks ago
3
Backport PR #1521: Lint tests

#1522 flying-sheep closed 1 week ago
1
Lint tests

#1521 flying-sheep closed 2 weeks ago
1
2D indexing (no “:”) in `sparse_dataset` is not lazy

#1520 flying-sheep opened 2 weeks ago
7
[pre-commit.ci] pre-commit autoupdate

#1519 pre-commit-ci[bot] closed 2 weeks ago
2
Add triage label for new issues

#1518 flying-sheep closed 3 weeks ago
0
Reading Anndata from only parts of h5ad file: Hack solution

#1517 mtvector opened 3 weeks ago
6
Coerce np.matrix instances to np.ndarray

#1516 flying-sheep closed 1 week ago
1
Fix settings

#1515 flying-sheep closed 3 weeks ago
1
(fix): fix for new `scipy.sparse` matrix strings in `sparse_dataset` docstring tests

#1514 ilan-gold closed 1 week ago
5
Potentially flaky benchmark

#1513 ilan-gold opened 3 weeks ago
1
[pre-commit.ci] pre-commit autoupdate

#1512 pre-commit-ci[bot] closed 3 weeks ago
2
Backport PR #1510: [pre-commit.ci] pre-commit autoupdate

#1511 meeseeksmachine closed 3 weeks ago
1
[pre-commit.ci] pre-commit autoupdate

#1510 pre-commit-ci[bot] closed 4 weeks ago
1
(chore): change boolean settings names to use `should`

#1509 ilan-gold closed 3 weeks ago
1
Backport PR #1506 on branch 0.10.x ((fix): spelling issues for CI)

#1508 meeseeksmachine closed 1 month ago
1
(feat): add `check_uniqueness` setting

#1507 ilan-gold closed 3 weeks ago
1
(fix): spelling issues for CI

#1506 ilan-gold closed 1 month ago
1
`concat_on_disk` merge strategies are untested/not implemented

#1505 ilan-gold opened 1 month ago
0
(feat): allow `join=outer` for `concat_on_disk`

#1504 ilan-gold opened 1 month ago
4
`concat_on_disk` outer join

#1503 ilan-gold opened 1 month ago
0
Make the call to `_check_uniqueness()` optional in `_init_as_actual()` (and `__init__()`)

#1502 LucaMarconato closed 3 weeks ago
1
(fix): add warning for setting `X` on view with repeat indices

#1501 ilan-gold opened 1 month ago
1
Backport PR #1499: Numpy 2 compatibility

#1500 flying-sheep closed 1 month ago
1
Numpy 2 compatibility

#1499 flying-sheep closed 1 month ago
1
Does anndata.raw can be automatically modified after define it?

#1498 moonbyul-99 opened 1 month ago
0