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Hello,
I have really appreciated the information in your workshops page, but I have ran intro an error when I try to plot heatmap tree with log2 ratio
Error: 'filter_taxa' is not an exported obje…
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Hello,
Thanks for developing this very interesting package! I'm facing a problem because I'd like to illustrate the result of a differential abundance analysis with the heat_tree function, i.e. I'd…
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I tried to run alpha diversity analysis from https://grunwaldlab.github.io/metacoder_documentation/workshop--07--diversity_stats.html, and test below codes:
library(vegan)
sample_data$alpha rlang::…
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Hi,
Thank you for the metacoder package.
I'm having an error while trying to run the code you added on Jan. 7, 2021 on issue #297. I have the error with hmp_otus and hm_samples data as well as with …
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Hi,
I stumbled across your tool and have the feeling that it is just right for my application, but even with the help of your documentation I haven't quite figured out if and how I can use it for m…
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Hi Metacoder creators,
I'm trying to subset the meta_obj to keep only the taxa which are differentially abundant for plotting purposes.
Something like:
meta_obj$data$diff_table$log2_median_rati…
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* How to fill missing `values_from`
* `.sum_na` = TRUE/FALSE side-effects
* Examples from conformr-indstat & #4
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https://mp.weixin.qq.com/s/E76H5gqBK2TLbNJv0A4CpQ
ixxmu updated
8 months ago
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Hello! I've been having some issues correctly parsing my phyloseq object so that the node size and color are representative of the abundance of that taxon in my dataset.
The issue is reproducible …
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with R installed via the following conda environment spec,
```
name: env
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- python>=3.8
- snakemake-minimal>=7.1…