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For the tutorial, only shows the single omics analysis using Stabl, but the cyto_ool and other datasets were not used in the tutorial. So could I find the tutorial or the codes for multi-omics elsewhe…
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Hello spatialdata team,
Thank you for this wonderful package for spatial omics analysis.
I am currently using spatialdata to align immunohistochemistry image with xenium using alignment matrix f…
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See https://github.com/MoTrPAC/motrpac-bic-pm/issues/150 for details
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Hello GATK team!
## Bug Report
### Affected tool(s) or class(es)
mutect2
### Affected version(s)
- Latest public release version: 4.2.6.1
### Description
getting fail for all scatt…
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Identify at least 2, ideally 3 alternative methods that can use prior information (known targets of transcription factors) to predict TF activities on single-cell transcriptomic profiles.
These met…
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New projects (5):
1. [High-Resolution Transcriptomic Landscape of the Human Submandibular Gland.](https://data.humancellatlas.org/explore/projects/ccc3b786-1da0-427f-a45f-76306d6143b6)
1. [Multimoda…
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Hello, I encountered the following bug when running R-peer again
![image](https://user-images.githubusercontent.com/54279739/154687130-c40201e1-5ddd-40f3-9a45-994e7fb4c63d.png)
this is my code:
lib…
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@pli888 Focus the proposal on metabolic imaging?
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Recently, I wanted to integrate snATAC and snRNA data collected from different platforms using Seurat's multi-omics integration function. However, after testing (including testing the small datasets p…
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The performance of random forest and the implementation of the [input_to_cuml_array](https://github.com/rapidsai/cuml/blob/branch-23.06/python/cuml/internals/input_utils.py#L286) method is very slow w…