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broadinstitute
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gatk
Official code repository for GATK versions 4 and up
https://software.broadinstitute.org/gatk
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[EchoCallset] Support > 100 vet tables [VS-1377]
#8840
mcovarr
closed
23 hours ago
0
[ah_var_store] Support > 100 vet tables [VS-1377]
#8839
mcovarr
closed
23 hours ago
0
PackagesNotFoundError: The following packages are not available from current channels:
#8838
sahuno
opened
1 day ago
3
Mutect2 germline resource can have split multiallelic format
#8837
davidbenjamin
opened
2 days ago
3
Bigger Permutect tensors and Permutect test datasets can be annotated with truth VCF
#8836
davidbenjamin
closed
1 day ago
0
Scatter adjustments [VS-516]
#8835
mcovarr
closed
1 day ago
0
VCF row validation error on gCNV results
#8834
MattWellie
opened
3 days ago
6
Fix integration tests [VS-1374]
#8833
mcovarr
closed
2 days ago
0
Update the large CRAM files to v3.0.
#8832
cmnbroad
opened
3 days ago
2
Adding arg to VariantFiltration to write your own description in Header
#8831
meganshand
closed
2 days ago
1
VS-1368 The tarball is too damn big (#8829) -- Echo Callset Version
#8830
gbggrant
closed
4 days ago
0
VS-1368 The tarball is too damn big
#8829
gbggrant
closed
4 days ago
1
VS-1371 - Compress the tarball for Extract Pgen Merged
#8828
gbggrant
closed
4 days ago
1
[bug report] CNNScoreVariants can't continue
#8827
Ithinky
opened
1 week ago
1
[Echo] PGEN-non bonkers default disk size [VS-1279]
#8826
mcovarr
closed
1 week ago
0
PGEN non-bonkers default disk size [VS-1279]
#8825
mcovarr
closed
1 week ago
0
Add step function for VAT WDL scatter [VS-1355]
#8824
rsasch
closed
1 week ago
0
Fix Docker image tag bug
#8823
mcovarr
closed
1 week ago
0
Change inputs from optional to required according to feedback [VS-1300]
#8822
rsasch
closed
1 week ago
0
VS-1327 ensure sample ids are unique echo callset version
#8821
gbggrant
closed
1 week ago
0
VS-1335 bgzip on extract Echo Callset version (#8809)
#8820
gbggrant
closed
1 week ago
0
Diagnostics.
#8819
cmnbroad
opened
1 week ago
3
VS_1327 ensure sample ids are unique
#8818
gbggrant
closed
1 week ago
0
Small fixes to Calculate Precision and Sensitivity WDL [VS-1168]
#8817
rsasch
closed
1 week ago
0
[EchoCallset] VCF max alt alleles [VS-1334] [VS-1357]
#8816
mcovarr
closed
1 week ago
0
PGEN max alt alleles sharp edge fix EchoCallset edition [VS-1279]
#8815
mcovarr
closed
1 week ago
0
[EchoCallset] Retry with more memory VCF extract [VS-1351]
#8814
mcovarr
closed
1 week ago
1
VS-341 improve test cost calc echo callset version
#8813
gbggrant
closed
1 week ago
0
[ah_var_store] Retry with more memory VCF extract [VS-1351]
#8812
mcovarr
closed
1 week ago
2
Max alts default, docs for AoU PGEN extract [VS-1279]
#8811
mcovarr
closed
1 week ago
0
[BIOIN-1570] Fixed edge case in variant annotation
#8810
ilyasoifer
opened
2 weeks ago
2
VS-1335 bgzip on extract ah var store edition
#8809
gbggrant
closed
1 week ago
0
GATK Reduced Docker Layers for ACR
#8808
kevinpalis
closed
1 week ago
1
Apply latest test changes to echo callset
#8807
gbggrant
closed
2 weeks ago
0
[ah_var_store] VCF max alt alleles [VS-1334] [VS-1357]
#8806
mcovarr
closed
1 week ago
0
Docker untangling [VS-1279]
#8805
mcovarr
closed
2 weeks ago
0
X_FILTERED_COUNT semantics adjusted
#8804
dror27
closed
2 weeks ago
0
VS-1310. Update gatk docker on EchoCallset
#8803
gbggrant
closed
2 weeks ago
0
Add malaria spanning deletion exception regression test with fix
#8802
ldgauthier
closed
2 weeks ago
0
VS-1356 - Update docker from master
#8801
gbggrant
closed
2 weeks ago
0
VariantAnnotator IndexOutOfBoundsException
#8800
ykcchong
opened
2 weeks ago
0
Added long read walkers from long-running branch.
#8799
jonn-smith
opened
2 weeks ago
1
VS-1310 Optionally convert filtered genotypes to no-calls (#8793)
#8798
gbggrant
closed
2 weeks ago
0
VS-1310 - VS-1310 changes to echo callset branch
#8797
gbggrant
closed
2 weeks ago
0
Moving some long read tools into GATK from a long-standing branch
#8796
jonn-smith
closed
2 weeks ago
3
VS-1341 Improve test cost calculation
#8795
gbggrant
closed
1 week ago
0
Vat pipeline--Even more juice
#8794
RoriCremer
closed
3 weeks ago
0
VS-1310 Optionally convert filtered genotypes to no-calls
#8793
gbggrant
closed
3 weeks ago
1
PLINK2 Docker [VS-1315]
#8792
mcovarr
closed
3 weeks ago
0
Fix GAR support [VS-1342]
#8791
mcovarr
closed
3 weeks ago
1
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