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'symbiont-mediated perturbation of host signal transduction pathway via antagonism of host cell surface receptor'
child of 'perturbation of host signal transduction pathway'
@genegodbold to pr…
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Running Kraken2 on 2 million samples with a 256-GB DB with our infrastructure is more challenging than I previously thought, here I describe some (incomplete) preliminary tests and benchmarks.
## K…
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Currently we have this:
```
|_enoyl-[acyl-carrier-protein] reductase activity (GO:0016631) [no EC/RHEA] [20 EXP annot.]
|_enoyl-[acyl-carrier-protein] reductase (NADPH, A-specific) activity (GO…
sjm41 updated
7 months ago
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Hi @genegodbold
We have terms for these for viruses:
- PATHGO:0000302 | disrupts JAK-STAT signaling in another organism [Gene--I provide eukaryotic and bacterial examples below]
- PATHGO:0000…
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* **PTHR ID & PTN node:**
PTN001270476
* **Sequences with problematic annotation (ID + gene/protein name):**
E.g. fly CG33120 (FBgn0053120/Q9VJ41)
Not totally sure, but I think this PAINT anno…
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Hi, I found a error as follows:
(bactopia) lh@chicken:~/Desktop$ bactopia datasets --species "Salmonella enterica" --skip_amr
2022-12-26 13:34:20:root:INFO - Salmonella enterica verified in E…
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* [GO:0075118 perturbation of host G protein-coupled receptor signal transduction pathway](https://amigo.geneontology.org/amigo/term/GO:0075118#display-lineage-tab) >> has no references and no annotat…
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Hello,
I've been working with Promotech v1.0, commit number [221b257].
I've attempted to predict the entire genome of Mycobacterium tuberculosis using the following commands:
`python promotech.py…
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Hi @futianfan , thanks for sharing this wonderful piece of work!
I'd like to reproduce the RGA experiment results, but found that pre-specified `center_x, center_y, center_z` would be needed for each…
qky18 updated
11 months ago
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### Model Name
H3D virtual screening cascade light
### Model Description
This panel of models provides predictions for the H3D virtual screening cascade. It leverages the Ersilia Compound Embedding…