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### Basic information
* My operating system and version: Windows 10 Pro Education 22H2, OS Build 19045.4355
* My mzmine version: 4.0.8.
### What happened
I am processing approx. 1300 mzml fi…
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Dear Mrs
Thanks for your work of MSGF+, it is really an wonderful search engine. But I encountered confusion in the data format used for searching. I used MSGF+ in immunopeptidomics, at first, I co…
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These mzML files:
[example_data.zip](https://github.com/chasemc/IDBacApp/files/10749336/example_data.zip)
are also available from here:
https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=7ce7…
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Hi
MzMine Team
I am using MzMine 3. But some of the demo files are running on my system but other files are not. it shows "there are no data points in the files, satisfying module parameters.
I t…
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Hi, Thanks for the code upload. I'm running this in conda, and keep running into this issue with reading in the mz values and the tolerance values. What were the configurations used to convert your ra…
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Hi @griquelme - first, thanks for writing `tidyms`, it's a great package. I have been searching for a usable python library to build with.
The issue I am currently having is in parsing my mzml fil…
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The current "dev" version of the workflow fails for me on the self-test data. The log output is included below (as part of "pipeline_report.txt") , but the cause of the problem isn't apparent from it.…
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I use xcms3 usually via a Jupyter notebook interface using R 3.4.1. All components are installed with conda, from either conda-forge or bioconductor channels.
### Code and error message
On my lap…
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I might be potentially be putting my foot in my mouth for proposing this so let me know if that is the case, but have you considered adding sqlite support, either based on previous work such as the no…
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### Basic information
* My operating system and version: Windows 10/11
* My MZmine version: 3.9.0
### What happened
Last week Thermo RAW files (SIM data) imported without issue, but after ac…