sneumann xcms issues - Githubissues

sneumann / xcms

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis

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ppm paramenter for ChromPeakAreaParam

#756 stanstrup opened 1 day ago
0
Chromatograms of MS1 data with two different scan events per file

#755 breidan opened 5 days ago
0
Regarding the steps of operating FillChromPeaksParam

#754 v-v1150n opened 1 week ago
0
refactor: updates of documentation and extension of unit tests

#753 jorainer closed 3 weeks ago
3
Add a function to coerce from XcmsExperiment to XCMSnExp

#752 jorainer opened 3 weeks ago
0
fillChromPeaks: for MS2 chrom peaks: ensure data is integrated from spectra of the correct isolation window

#751 jorainer opened 3 weeks ago
0
Duplicate values created by fillChromPeaks

#750 frankyWk opened 1 month ago
1
refactor: add storeResults/loadResults for Spectra etc

#749 jorainer closed 1 month ago
0
Setter for filepath in XcmsExperiment

#748 jmorim closed 1 week ago
3
Retention time alignment using a combination of LamaParama and subset-based alignment

#747 CLUES-Emory opened 1 month ago
0
Import methods

#746 philouail opened 1 month ago
5
fix: ensure dropFeatureDefinitions correctly drops filled peaks

#745 jorainer closed 1 month ago
2
Visualize, use plotSpectraMirror function to draw spectrum matching results

#744 v-v1150n opened 1 month ago
2
Add new plotPrecursorIons function and address issue #742

#743 jorainer closed 3 weeks ago
8
Support excluding samples for PeakDensity correspondence

#742 jorainer opened 2 months ago
0
fix: filtering MsLevel for xic plot

#741 NorStorz closed 2 months ago
1
fix: add parameter rtimeDifferenceThreshold for ObiwarpParam

#740 jorainer closed 2 months ago
1
Waters data problems with Obiwarp

#739 parasitetwin closed 2 months ago
9
Best way to deconvolute metabolite data

#738 JasonBason opened 2 months ago
1
Ways to extract all MS2 peaks?

#737 jzhou19 opened 2 months ago
3
After I perform chromatographic peak detection, how do I confirm the quality of my peaks?

#736 v-v1150n opened 3 months ago
1
Best way to document additional XCMS object processing steps in the ProcessHistory slot?

#735 wkumler opened 3 months ago
3
Error for XIC plot of timsTof data

#734 NorStorz opened 3 months ago
3
The error message encountered when using the "IPO" package

#733 v-v1150n closed 3 months ago
10
`LamaParama` implementation for `AdjustRtime()`: correcting alignment based on external dataset.

#732 philouail closed 3 months ago
1
Update retention times to alkane retention time indices for GC-MS

#731 CLUES-Emory opened 3 months ago
5
xset crashes on MAC OS 14.3 R 4.3.3 , BiocManager 1.30.22 and xcms 4.0.2

#730 AndreasReinecke opened 3 months ago
6
R CMD check problems

#729 jorainer closed 3 months ago
5
Trouble plotting XChromatograms

#728 JasonBason closed 3 months ago
5
fillChromPeaks error

#727 JasonBason closed 3 months ago
2
precusor charge for each features

#726 13479776 opened 3 months ago
3
msLevel=2L chromatograms (MRM or SRM) not working with MsExperiment interface

#725 jmorim closed 3 months ago
1
Bad practices with peak merging

#724 jmorim closed 3 months ago
2
Filter MsExperiment object by spectraData filterString

#723 breidan closed 3 months ago
16
Ensure backward compatibility for Parameter classes that gained new slots

#722 jorainer closed 3 months ago
2
reconstructChromPeakSpectra

#721 Slycopersicum opened 4 months ago
1
Suggested starting parameters for GC-MS data

#720 ckeeling closed 3 months ago
3
fix issue #716 in XcmsExperiment-functions.R

#719 pablovgd closed 4 months ago
10
Addition of MzTabParam for export in .mztab format

#718 philouail opened 4 months ago
1
Seeking advices about data importing

#717 Babyfaceout opened 4 months ago
5
Trouble extracting chromatogram plots after manualChromPeaks()

#716 pablovgd closed 4 months ago
5
Retention time alignment using PeakGroupsParam's peakGroupsMatrix parameter renders error

#715 pablovgd closed 4 months ago
10
Update Ubuntu version for System dependency check

#714 sneumann closed 5 months ago
1
Addition of method to filter features based on quality assessment

#713 philouail closed 4 months ago
0
Add possibility to perform peak density correspondence considering m/z dependent margins

#712 jorainer closed 5 months ago
2
why do_groupChromPeaks_density processing peaks with fixed size of the overlapping slices in mz dimension

#711 WallFacerLR closed 5 months ago
17
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘findChromPeaks’ for signature ‘"XMLDocument", "MatchedFilterParam"’

#710 RbWick closed 5 months ago
2
Updates and fixes

#709 jorainer closed 5 months ago
4
How would a larger peak width vs smaller peak width affect m/z of features detected?

#708 Pembs opened 6 months ago
1
negative subsetting removes chromPeaks

#707 philouail closed 5 months ago
0