sneumann xcms issues - Githubissues

sneumann / xcms

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis

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Fix/issue778 using Rf_error()

#780 sneumann closed 4 days ago
1
Adding `chromPeaks` metadata to the `Spectra` output of `chromPeakSpectra()`

#779 philouail opened 6 days ago
1
Build issue due to C header files

#778 sneumann closed 4 days ago
0
adjustRtime Errors

#777 jzhou19 opened 2 weeks ago
4
Update vignette

#776 jorainer closed 4 weeks ago
0
xcms on conda

#775 cbroeckl opened 1 month ago
10
Using xcms and Spectra package

#774 felipe-mansoldo closed 1 month ago
5
addition of chromPeaksId to `matchLamaChromPeaks()` output

#773 philouail closed 1 month ago
2
Add chromPeakSummary function and a fix

#772 jorainer opened 1 month ago
3
featureValues and featureDefinitions

#771 yuan596 opened 2 months ago
1
Added peak quality section to xcms vignette.

#770 pablovgd closed 2 months ago
0
Multicore processing not using registered cores?

#769 CLUES-Emory closed 1 month ago
7
added chromPeakSummary method

#768 pablovgd closed 2 months ago
0
Add internal function to calculate beta metrics

#767 pablovgd closed 2 months ago
1
adjustRtime not conducted with large dataset, but working after register(SerialParam())

#766 c-ze opened 2 months ago
6
Peak mz values when running findChromPeaks on XChromatograms object

#765 CLUES-Emory closed 2 months ago
3
Error in running the tutorial

#764 Tina9 opened 2 months ago
1
Is there any way to map the corresponding MS1 and its isotope information to the MS2 data extracted with spectrum?

#763 GAOJianguo66 opened 3 months ago
0
fix: issue #755 for the RELEASE_3_19 branch

#762 jorainer closed 3 months ago
0
Some updates and bug fixes

#761 jorainer closed 3 months ago
0
Can't use quantify to get result into summarizedexperiment

#760 pablovgd closed 3 months ago
2
There's something wrong with maxo's calculations.

#759 dongdongdong7 opened 3 months ago
5
small fixes

#758 philouail closed 4 months ago
0
refactor: dump all data export functionality from xcms

#757 jorainer closed 4 months ago
2
ppm paramenter for ChromPeakAreaParam

#756 stanstrup opened 5 months ago
1
Chromatograms of MS1 data with two different scan events per file

#755 breidan closed 3 months ago
6
Regarding the steps of operating FillChromPeaksParam

#754 v-v1150n opened 5 months ago
3
refactor: updates of documentation and extension of unit tests

#753 jorainer closed 5 months ago
3
Add a function to coerce from XcmsExperiment to XCMSnExp

#752 jorainer opened 5 months ago
0
fillChromPeaks: for MS2 chrom peaks: ensure data is integrated from spectra of the correct isolation window

#751 jorainer opened 5 months ago
0
Duplicate values created by fillChromPeaks

#750 frankyWk opened 6 months ago
1
refactor: add storeResults/loadResults for Spectra etc

#749 jorainer closed 6 months ago
0
Setter for filepath in XcmsExperiment

#748 jmorim closed 5 months ago
4
Retention time alignment using a combination of LamaParama and subset-based alignment

#747 CLUES-Emory opened 6 months ago
2
Import methods

#746 philouail closed 4 months ago
6
fix: ensure dropFeatureDefinitions correctly drops filled peaks

#745 jorainer closed 6 months ago
2
Visualize, use plotSpectraMirror function to draw spectrum matching results

#744 v-v1150n opened 6 months ago
2
Add new plotPrecursorIons function and address issue #742

#743 jorainer closed 5 months ago
8
Support excluding samples for PeakDensity correspondence

#742 jorainer opened 7 months ago
0
fix: filtering MsLevel for xic plot

#741 NorStorz closed 7 months ago
1
fix: add parameter rtimeDifferenceThreshold for ObiwarpParam

#740 jorainer closed 7 months ago
1
Waters data problems with Obiwarp

#739 parasitetwin closed 7 months ago
9
Best way to deconvolute metabolite data

#738 JasonBason opened 7 months ago
1
Ways to extract all MS2 peaks?

#737 jzhou19 opened 7 months ago
3
After I perform chromatographic peak detection, how do I confirm the quality of my peaks?

#736 v-v1150n opened 8 months ago
1
Best way to document additional XCMS object processing steps in the ProcessHistory slot?

#735 wkumler opened 8 months ago
3
Error for XIC plot of timsTof data

#734 NorStorz opened 8 months ago
3
The error message encountered when using the "IPO" package

#733 v-v1150n closed 8 months ago
10
`LamaParama` implementation for `AdjustRtime()`: correcting alignment based on external dataset.

#732 philouail closed 8 months ago
1
Update retention times to alkane retention time indices for GC-MS

#731 CLUES-Emory opened 8 months ago
5