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sneumann
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xcms
This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
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Add tests for some ion mobility files
#706
sneumann
opened
6 months ago
1
Add a function that calculates peak quality metrics for detected peaks
#705
jorainer
opened
7 months ago
10
Vignette: avoid "data" as object name
#704
sneumann
closed
5 months ago
2
Fix issue with subset-based peakGroups alignment and other updates
#703
jorainer
closed
6 months ago
2
Definition of anchor peaks for subset-based peakGroups alignment not correct
#702
jorainer
closed
5 months ago
1
Batch effect correction without QC sample
#701
Kotchani
opened
7 months ago
1
xcmsSet interface gives errors
#700
rickhelmus
opened
7 months ago
13
Addition of PlainTextParam to the storeResults generic function
#699
philouail
closed
7 months ago
6
feat: creation of new generic function so save XcmsExperiment object
#698
philouail
closed
7 months ago
4
fix: add method to coerce XcmsExperiment to xcmsSet
#697
jorainer
closed
8 months ago
0
No method to convert XcmsExperiment to xcmsSet - Version 3.99.5
#696
CollinStark
closed
7 months ago
1
findChromPeaks finds duplicate peaks
#695
Pascallio
opened
8 months ago
1
do_findChromPeaks_centWave returns wrong maxo and int* values
#694
Pascallio
opened
8 months ago
3
Properly serialize an xcms result object to disk/files
#693
jorainer
opened
8 months ago
21
Build failure on arm/Linux
#692
sneumann
closed
8 months ago
2
refactor: chromatogram,XcmsExperiment with only mz or rt defined
#691
jorainer
closed
8 months ago
0
Build error invalid class "MsBackendMzR" object: slots not in object: "peaksVariables"
#690
sneumann
closed
9 months ago
2
Small final updates
#689
jorainer
closed
9 months ago
1
Need all chromatograms in particular sample
#688
13479776
opened
9 months ago
1
Error in writeMSData
#687
lshyun0415
opened
9 months ago
1
Polarity cannot be extracted
#686
crestre
opened
10 months ago
3
Adding new peak quality metrics to findChromPeaks for CentWave
#685
wkumler
closed
7 months ago
31
return EIC with peak detection output
#684
cbroeckl
opened
11 months ago
1
xcmsRaw - error
#683
crestre
opened
11 months ago
6
combineSpectra of a feature
#682
ricoderks
closed
11 months ago
3
Added link to changelog to README
#681
hechth
closed
12 months ago
0
Introduce a changelog
#680
hechth
closed
12 months ago
1
Add XCMS object as data to EDAM Ontology
#679
hechth
opened
1 year ago
4
How are features obtained if you don’t specify any class information for grouping?
#678
Pembs
opened
1 year ago
1
Why does fill peaks with XCMSnExp object result in considerably less features than fill peaks with XCMSset?
#677
Pembs
closed
1 year ago
6
ERROR: Dimensions of profile matrices do not match !
#676
zhengjxj
opened
1 year ago
1
Does minSamples override minFraction when grouping?
#675
Pembs
closed
1 year ago
2
Two overlapping peaks with the same m/z detected as one
#674
MonicaCalSan
closed
1 year ago
2
fix: fix for issue #511
#673
jorainer
closed
1 year ago
1
Move multtest from Suggests to Imports in dependencies
#672
sneumann
closed
1 year ago
0
Handling multtest dependency (BioC build error)
#671
sneumann
closed
5 months ago
3
Error Invalid cvParam accession "1003293"
#670
RemyDeB
closed
1 year ago
1
Centwave error with converted .wiff files.
#669
jsimpso1
opened
1 year ago
1
adjustRtime() Error
#668
zinuo-H
closed
1 year ago
8
tests: fix longtests
#667
jorainer
closed
1 year ago
0
xcms 4: native support for MsExperiment and Spectra
#666
jorainer
closed
1 year ago
2
feat: support XcmsExperiment for last functions
#665
jorainer
closed
1 year ago
0
findChromPeaks returns duplicate peaks
#664
chuyaowang
opened
1 year ago
6
Cannot read mzdata.xml file
#663
chuyaowang
closed
1 year ago
3
Improve performance for SWATH/DIA data analysis
#662
jorainer
closed
1 year ago
0
About spectra simplify
#661
Cc20230205
opened
1 year ago
4
Dataset Error Report
#660
Vignesh291
opened
1 year ago
5
Unable to find an inherited method for function ‘clean’ for signature ‘"Spectra"’
#659
kumarsaurabh20
closed
1 year ago
2
Question about Warning: replacing previous import
#658
felipe-mansoldo
closed
1 year ago
2
worker failed with the error: wrong args for environment subassignment (xcMSnExp obj)
#657
Pembs
closed
1 year ago
2
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