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I just tried to run the workflow on a WGS dataset and got an error message from two of the CNNScore tasks (out of 40 total). I tried to verify the problem by running the failed task directly, both wit…
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Please note that this is a question about the reproducibility of a research, so this is neither a bug report nor a feature request.
It looks like this package is able to compute all the four key s…
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### Installation Type
Standalone
### pVACtools Version / Docker Image
4.0.8
### Python Version
3.10
### Operating System
Ubuntu 22.04
### Describe the bug
Full warning message:
```
/usr/loc…
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Hi,
I have a question regarding the dai_uuid column as I want to compare the mutated peptides with their wt peptide. I was told that this is the column to compare on, but in my output file I have s…
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### Installation Type
Standalone
### pVACtools Version / Docker Image
latest edition
### Python Version
3.8
### Operating System
Linux
### Describe the bug
Prompt MHCstab connection reset whi…
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https://mp.weixin.qq.com/s/Rm1UOCIrGllYl_za609W5g
ixxmu updated
8 months ago
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Hi,
i'm encountering a chmod issue with pVACSeq:
```
executor > local (3)
[- ] process > merge_fastq -
[a4/caf946] process > RegionsBedToIntervalList (R... [100%] 1…
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### Installation Type
Standalone
### pVACtools Version / Docker Image
4.0.0
### Python Version
3.9.1
### Operating System
CentOs 7
### Describe the bug
When I launch the following command I o…
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### Installation Type
Docker
### pVACtools Version / Docker Image
griffithlab/pvactools:4.0.1
### Python Version
_No response_
### Operating System
_No response_
### Describe the bug
Hello,
…
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For some runs it is desirable to annotate variant results from the pipeline with those that were also called in another pipeline. For example these could be variants from a CLIA/CAP pipeline and chec…