griffithlab pVACtools issues

griffithlab / pVACtools

http://www.pvactools.org

BSD 3-Clause Clear License

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issues

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CannotConvertValue: 125,142 cannot be converted to Integer, keeping as string

#1120 dincerkilic opened 1 week ago
2
BigMHC prediction not working

#1119 giacuong171 closed 1 week ago
3
pVACseq: Discrepancy between {sample_id}.all_epitopes.tsv and {sample_id}.fasta ?

#1118 yiolino opened 1 week ago
1
Updated mouse anchor data links

#1117 ldhtnp opened 2 weeks ago
0
fixing rounding issue in min-max slider

#1116 evelyn-schmidt opened 2 weeks ago
2
Only check for refseq_select_prot blast db species compatibility if ref proteome similarity step is run with blast

#1115 susannasiebert closed 2 weeks ago
0
Output anchor positions currently applied to the data in pVACview

#1114 susannasiebert opened 3 weeks ago
0
Issue/1109 Minor pVACview improvements

#1113 ldhtnp closed 4 weeks ago
0
Method for decomposing MT-WT aa sequences

#1112 nttvy opened 1 month ago
3
NetChop SSLError

#1111 Tseng722 closed 3 weeks ago
1
Added support for mouse specific allele anchor positions

#1110 ldhtnp closed 3 weeks ago
1
Minor pVACview improvements

#1109 susannasiebert closed 3 weeks ago
0
Added new valid_algorithms command (#1106)

#1108 ldhtnp closed 1 month ago
0
Frameshift VEP plugin

#1107 SirKuikka opened 1 month ago
5
Implement new command `pvacseq valid_algorithms` to see which prediction algorithms support a specific allele and/or species

#1106 susannasiebert closed 3 weeks ago
0
Add an option to the valid_alleles command(s) to filter output by species

#1105 susannasiebert closed 1 month ago
0
Zero or few results after filtering

#1104 SirKuikka opened 1 month ago
5
Support for custom epitope prediction algorithms

#1103 boyangzhao opened 1 month ago
1
help with pVACseq customization

#1101 javierAPC closed 1 month ago
2
Reviewing PR #1062

#1100 susannasiebert closed 2 months ago
0
if protein_identifiers_from_label[protein_label] is not None: KeyError: 92

#1099 brycemash closed 2 months ago
2
Potential improvements to the pVACview NeoFox module

#1098 susannasiebert opened 2 months ago
0
Update pvacseq_vignette.rst

#1097 chrisamiller closed 1 month ago
1
Update pvacseq_upload.rst

#1096 chrisamiller closed 2 months ago
1
Update pvacseq_features.rst

#1095 chrisamiller closed 2 months ago
1
Fix incorrect transcript2 parsing from Arriba

#1094 susannasiebert closed 2 months ago
0
Consider integration of MixMHCPred2

#1093 malachig opened 2 months ago
1
Version of tools used in pVacFuse

#1092 min-codes closed 1 month ago
2
Generate protein fasta prox vars

#1091 evelyn-schmidt closed 1 month ago
0
Prefilter pVACseq and pVACsplice on a user-defined list of biotypes

#1090 susannasiebert opened 3 months ago
0
Output a visual representation of the graph after all spacers have been tested

#1089 susannasiebert opened 3 months ago
0
Outputting accounted-for germline variants

#1088 evelyn-schmidt opened 3 months ago
1
Fix various pVACvector issues

#1087 susannasiebert opened 3 months ago
0
Ensure that elution and immunogenicity percentile data is included in pVACview %ile violin plot

#1086 susannasiebert opened 3 months ago
0
Traceback (most recent call last): change_permissions_recursive

#1085 xmy1990 closed 1 month ago
9
pVACtools not working with newest tensorflow (2.16.1)

#1084 Stikus closed 3 months ago
7
Update to version 4.1.1

#1083 susannasiebert closed 3 months ago
0
Fix issue where method to determine matched wt result didn't return where appropriate

#1082 susannasiebert closed 3 months ago
0
ValueError: invalid literal for int() with base 10: ''

#1081 ahkamzifo closed 3 months ago
3
OSError: [Errno 9] Bad file descriptor

#1080 ahkamzifo closed 1 month ago
7
Handle nan values in the Mutation Position column

#1079 susannasiebert closed 3 months ago
0
Write DeepImmuno outputs to unique file locations

#1078 susannasiebert closed 3 months ago
0
Return list of combinatorial class II alleles in sorted order to be deterministic

#1077 susannasiebert closed 3 months ago
1
Restart inputs are different from past inputs

#1076 YingYa closed 3 months ago
5
ValueError: dict contains fields not in fieldnames: 'DeepImmuno WT IC50 Score', 'DeepImmuno MT IC50 Score'

#1075 YingYa closed 3 months ago
8
TypeError: argument of type 'float' is not iterable

#1074 YingYa closed 3 months ago
3
Update pVACview demo data download links GitHub commit

#1073 susannasiebert closed 3 months ago
0
Fix typo

#1072 susannasiebert closed 3 months ago
0
Fix blurry pVACvector visualization images

#1071 susannasiebert closed 3 months ago
0
Remove BigMHC and DeepImmuno as direct dependencies

#1070 susannasiebert closed 4 months ago
0