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griffithlab
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pVACtools
http://www.pvactools.org
BSD 3-Clause Clear License
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Update pVACview demo data download links GitHub commit
#1073
susannasiebert
closed
4 months ago
0
Fix typo
#1072
susannasiebert
closed
4 months ago
0
Fix blurry pVACvector visualization images
#1071
susannasiebert
closed
4 months ago
0
Remove BigMHC and DeepImmuno as direct dependencies
#1070
susannasiebert
closed
4 months ago
0
DISPLAY variable issue when running pvacvector visualize
#1069
Yonghao-Holden
closed
4 months ago
5
Update demo data, example data, and documentation for upcoming 4.1.0 release
#1068
susannasiebert
closed
4 months ago
0
FutureWarning: Value 'NA' has dtype incompatible with float64, please explicitly cast to a compatible dtype first
#1067
Stikus
closed
5 months ago
1
Minor fix in readme
#1066
serge2016
closed
5 months ago
3
Add more information about testing to the How to Contribute page
#1065
susannasiebert
closed
5 months ago
0
QUESTION: How to integrate netchop results to aditionnally filter possible peptides
#1064
PierreLaplante
opened
5 months ago
0
Add BigMHC and DeepImmuno prediction algorithms
#1063
susannasiebert
closed
5 months ago
0
pVACview reviewer response
#1062
evelyn-schmidt
closed
2 months ago
0
Remove "Show entries" and search box in Additional Peptide Information box / Binding Data tab
#1061
huimingx
closed
5 months ago
1
Remove "Show x entries" dropdown from "Binding Data" and "Elution Data" tabs
#1060
susannasiebert
closed
4 months ago
0
pVACview demo: some candidates dont show anchor heatmap
#1059
mhoang22
closed
5 months ago
1
ref-transcript-mismatch-reporter does not work
#1058
xmy1990
closed
5 months ago
6
Fix MHCflurry EL processing for pVACbind
#1057
susannasiebert
closed
5 months ago
0
Overview of possible new prediction algorithms and their installation/run requirements
#1056
susannasiebert
opened
5 months ago
0
Add command to download WDL files
#1055
susannasiebert
closed
4 months ago
0
Display pVACtools version in the footer of pVACview
#1054
susannasiebert
closed
4 months ago
0
CalledProcessError
#1053
ZoeChao2001
closed
6 months ago
3
Error out when attempting to use multithreading on MacOS
#1052
susannasiebert
closed
6 months ago
0
Consider integration with ACE a tool for generation of ELISpot configurations (peptide-pool assignments)
#1051
malachig
opened
6 months ago
0
Handle various IEDB outputs with incorrect data
#1050
susannasiebert
closed
6 months ago
0
Retry when IEDB API returns no prediction data
#1049
susannasiebert
closed
6 months ago
0
Handle output from MHCflurry when one of the percentiles is empty
#1048
susannasiebert
closed
6 months ago
0
SUGGESTION Add specific anchoring residues for alleles H2-Db, Kb, Dd, Hd and Kd from https://doi.org/10.1084/jem.20190179
#1047
PierreLaplante
opened
6 months ago
1
TypeError: '<' not supported between instances of 'float' and 'str'
#1046
ZoeChao2001
closed
6 months ago
3
Support TSL for GRCm38
#1045
susannasiebert
closed
6 months ago
0
TSL level not reported (and used as a filter) in all_epitope.tsv/aggregated.tsv
#1044
PierreLaplante
closed
6 months ago
5
WARNING [__init__.py:662] did not find allele distance info from netmhcpan_output
#1043
PierreLaplante
closed
6 months ago
10
Fix issue with how AGFusion fusion positions are determined
#1042
susannasiebert
closed
6 months ago
0
Adjust BLASTp word size to be no more than half the query sequence length
#1041
susannasiebert
closed
6 months ago
0
Any plans to implement anchor binding position in pVACseq
#1040
immuneAI
closed
6 months ago
2
ERROR: output_parser.py(195)match_wildtype_and_mutant_entry_for_missense() -> wt_epitope_seq = wt_result['wt_epitope_seq'] -- (Pdb)
#1039
ZoeChao2001
closed
6 months ago
6
Transcript in set
#1038
evelyn-schmidt
closed
6 months ago
1
Error occurs if there are no transcripts in set
#1037
evelyn-schmidt
closed
6 months ago
1
Fix bug that resulted in the TSL getting incorrectly evaluated when determining the best peptide
#1036
susannasiebert
closed
8 months ago
0
pVACseq submits too big of a file to NetMHCstab server?
#1035
mantczakaus
closed
8 months ago
4
Where there are multiple transcript sets in pVACview, select the one containing the top peptide
#1034
malachig
closed
4 months ago
2
How does pvacfues derive the START/STOP of fusion transcript that "resulted" in a peptide?
#1033
min-codes
closed
6 months ago
7
What is the standard input for gene expression for pVACtools?
#1032
PierreLaplante
closed
6 months ago
2
ERROR: There was a mismatch between the actual wildtype amino acid sequence (G) and the expected amino acid sequence (A).
#1031
PierreLaplante
closed
6 months ago
2
Expose per-allele, per-position anchor contribution weights to pVACview
#1030
susannasiebert
closed
4 months ago
0
Investigate PRIME prediction algorithm
#1029
jhundal
opened
10 months ago
1
Revert "Run MHCflurry in code instead of from the command line"
#1028
susannasiebert
closed
10 months ago
0
Cannot connect to the MHCstab server
#1027
Histidine127
closed
8 months ago
2
Temporary directory for pvacseq
#1026
ysbioinfo
closed
8 months ago
5
ref-transcript-mismatch-reporter ZeroDivisionError: float division by zero
#1025
weilinwu97
closed
10 months ago
1
pVACseq TypeError: ‘<’ not supported between instances of ‘float’ and ‘str’
#1024
weilinwu97
closed
8 months ago
8
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