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e.g. https://tree.opentreeoflife.org/curator/study/view/ot_299
I'm not sure if this is the behaviour we want or not, but I found it a bit unintuitive.
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Spin out from #855 which was specifically for ``test_NCBIXML.py`` but has the same root cause.
Some of the test XML files contain a non-ASCII accented character:
```
$ grep $'\xc3\xbc' PhyloXML…
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A.k.a. the 2-year old macaque problem.
(1) requests that exceed or over-stress the load capacity of the server should fail, with an error message indicating that client code could repeat request usin…
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Interoperability between ropensci data sources: We come back to this theme frequently, but have yet to work this out. Our efforts match the data providers model wherever possible, but it would be grea…
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### Steps to reproduce the bug
```bash
1. View an OM /tasks/observation_matrices/view/31
2. Click on the View NeXML link
On View NeXML get a 500 error 'Missing partial observation_matrices/export…
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Examples of simple use cases:
- submit a Newick tree, receive a modified Newick with new names
- submit a Newick tree, receive a NexSON file w/ tree and OTU mappings
- submit a flat file of taxon labe…
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@mbjones Revisiting this -- now that I have authentication working I thought I'd go ahead and add KNB as a publish option for reml (see https://github.com/ropensci/reml/issues/20, https://github.com/r…
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FigTree http://tree.bio.ed.ac.uk/software/figtree/ is still a popular figure generating tool.
If I do:
```
OT2Fig.new_figure(
file_listing_taxa_to_show: File.open('taxa_one_per_line.txt'),
o…
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Different machine with different java and different Build problems:
```
Apache Maven 3.0.5
Maven home: /usr/share/maven
Java version: 1.7.0_80, vendor: Oracle Corporation
Java home: /usr/lib/jvm/java…
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Migrated from https://redmine.open-bio.org/issues/3407
@bendmorris said:
> This was reported to me by Arlin Stoltzfus (quote):
>
> > There is a description of Newick here:
> >
> > http://evolution…