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This code will be used in pipeline processing. It is currently called on each dataset individually. However, medical imaging software is often configured so images can be pushed to it and it then push…
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Here is an update regarding the processing steps needed to be able to feed our data into the YOLOv8 model.
### First, here is a recap of what the model expects as input:
- The data should be org…
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# **Task** (what are you trying to do/register?)
Warp field from voxelmorph is in IJK coordinate instead of XYZ. This maybe ambiguous when performing image transform in other software like Slicer 3…
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'origin' info is recorded in results files and used to determine origin of
brain measurements in mm. I think it's read in from input scan header.
Sometimes (e.g. RRSD normalized data (Nifti .img…
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The project could use a javascript demo of a visualization tool that could be embedded in websites for demos and advertisement.
Path of least resistance is probably to use the medical imaging AMI Me…
EiffL updated
6 years ago
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Here are some notes from our discussion just now.
The proposal for making it possible to discover data package installations is https://github.com/nipy/nibabel/wiki/data_packages
I put up an issue f…
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Hi
Dear Dominik
The network test code has been tested as below just on 3 sample case from kits:
**from miscnn import *
# Create a Data I/O interface for kidney tumor CT scans in NIfTI format
fr…
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I'm curious what would be considered an "idealized" reproducible processing stream, and what is a "good enough" reproducible processing stream, and identify the tools/skills needed to complete a "good…
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## Describe the new feature or enhancement
Add option to load CT scans from NIfTI or DICOM formats to be used within a simulation
## Describe your proposed implementation
This would be simila…
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Hello,
How do I perform multi class semantic (instance) segmentation over my set of 2D PNG/TIF grayscale images and their corresponding masks file (NPY numpy array, TIF or any other) matrix represe…