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In the docs, writing `` :class:`sklearn.preprocessing.StandardScaler` `` will be rendered as `sklearn.preprocessing.StandardScaler`. To make it shorter, we can prefix with a `~` i.e. `` :class:`~skl…
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I meet a problem when I try to follow your command.
python prep-text.py data/sample/month1 data/sample/month2 data/sample/month3 -o data --tfidf --norm
/home/jjc/anaconda3/lib/python3.7/site-packa…
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#### Description
The documentation of default values in many classes is either not included, inconsistent in how it is written, or out-of-date. I would like to gather a few people to work on the defa…
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Dear @andreadega ,
I really like the package signature.tools.lib because it provides the powerful function SignatureExtraction() to extract mutational signatures. My question is I had a hard time i…
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For better support, please use the template below to submit your issue. When your issue gets resolved please remember to close it.
Sometimes errors while running CNMF occur during parallel processi…
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Dear team
I have a cohort of ~250 WES HCC cancer samples, with a total of ~ 40K variants in exome region only. My first step is to perform de novo mutational signature extraction to see if I can fi…
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Hi,
I have installed maftools from Bioconductor. When I am using the extractSignatures function with the following parameters on different datasets where are should be more than 10 signatures:
(mat…
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```
ImportError Traceback (most recent call last)
in
15 from bs4 import BeautifulSoup
16 from nltk.stem import WordNetLemmatizer
---> 17 from nlg_yongzhu…
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Hi
I am using mutational catalog like this
```
Substitution 1_Sample 2_Sample 3_Sample 4_Sample
A[C>A]A 409 387 432 438
A[C>A]C 204 191 233 214
A[C>A]G 31 26 30 34
```
I typed
```…
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We recently added a [Glossary](http://scikit-learn.org/dev/glossary.html) to our documentation, which describes common parameters among other things. We should now replace descriptions of `random_stat…