flatironinstitute CaImAn issues

flatironinstitute / CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

https://caiman.readthedocs.io

GNU General Public License v2.0

639 stars 370 forks source link

issues

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RuntimeWarning: invalid value encountered in divide

#1426 clee162 opened 2 days ago
1
The following packages are causing the inconsistency: - defaults/osx-arm64::conda-build==24.1.2=py311hca03da5_0

#1424 noah08642 opened 4 days ago
3
Issues with installing/importing CaImAn using only conda-forge on a windows

#1423 isaacracine closed 4 days ago
2
Include background component indices when removing empty/nan components in spatial.py

#1422 ethanbb opened 1 week ago
0
How to specify temp files

#1419 ziqihugo opened 3 weeks ago
4
1P motion correction parameters

#1418 melkalliny opened 3 weeks ago
0
Add dependencies to `pyproject.toml`

#1417 sneakers-the-rat opened 3 weeks ago
4
Propose removing old unmaintained skcuda code

#1416 kushalkolar opened 3 weeks ago
1
Delete unwanted ROI directly from estimates.nb_view_components

#1415 zhouyi0812 opened 1 month ago
0
IncompleteRead Error while trying to load demo videos

#1414 raymondwjang opened 1 month ago
8
unexpected number of cells identified by onACID in `demo_online_cnmfE.ipynb`

#1413 raymondwjang opened 1 month ago
5
Demo Notebook for onACID

#1411 raymondwjang closed 1 month ago
3
Fix docstrings important for seeded initialization

#1410 kushalkolar closed 1 month ago
1
What is the best way to estimate event rate in 1p using CaImAn?

#1408 programerkotik opened 1 month ago
1
Poor outcome of PW-Rigid Motion Correction on 2P Data

#1407 mohammadsohaib opened 2 months ago
4
Add winget instructions for dev mode Windows installation

#1406 ethanbb closed 2 months ago
3
Try to use pytest for tests

#1405 hmaarrfk closed 2 months ago
1
Saving motion corrected movies results in shifted image for multiple frames

#1404 smbaca closed 2 months ago
5
are red traces from two images comparable?

#1403 XiaoqianSun0104 opened 2 months ago
2
How do I change the path to the temp folder?

#1401 ichigomikako closed 2 months ago
3
Installation Issues

#1399 CeeLo closed 2 months ago
1
environment issue when install caiman

#1398 Sonder-193 opened 2 months ago
13
way to executing demo notebook in bulk

#1397 kazugorira closed 2 months ago
4
Pytorch dev

#1396 manuelpaeza opened 2 months ago
0
Save memory by returning a sparse array from extract_binary_masks_from_structural_channel

#1395 ethanbb opened 2 months ago
3
3D movie

#1394 rajlakshmi-sawale closed 3 months ago
0
motion correction breaks when tif file carries channel data

#1393 ashwin-miriyala opened 3 months ago
2
Free up memory in MotionCorrect.py / apply_shifts_movie function

#1392 deMalmazet closed 3 months ago
1
only algos

#1391 kushalkolar opened 3 months ago
3
caiman core

#1390 kushalkolar closed 3 months ago
1
CaImAn GUI 'viewing component' param not working

#1389 caichangjia opened 3 months ago
1
"Bad file descriptor" error during processing

#1388 programerkotik opened 3 months ago
3
Fix conversion from sparse matrix to dense array when nb == 0 and not low_rank_background

#1387 ethanbb closed 2 months ago
1
Compare kind of dtype rather than dtype itself

#1386 ethanbb closed 3 months ago
0
Fix error when saving array with NaNs (occurs with corr_img when use_corr_img is True)

#1385 ethanbb closed 3 months ago
4
Fix unbound local error in online_cnmf when use_corr_img is true but is1p is false

#1384 ethanbb closed 3 months ago
0
Pytorch dev

#1383 manuelpaeza closed 3 months ago
0
dev to main for release 1.11.3

#1380 pgunn closed 3 months ago
0
dev to main for release 1.11.2

#1379 pgunn closed 4 months ago
0
Logging cleanup

#1378 pgunn closed 4 months ago
1
Fine-grained logging, and/or CNMF.fit() logging adjustments

#1376 pgunn closed 4 months ago
3
mmapping: fix a path goof where a double-correction caused a problem

#1375 pgunn closed 4 months ago
0
How to disable logging?

#1374 nick-youngblut closed 3 months ago
28
Docs: add info on env variables

#1373 nick-youngblut closed 4 months ago
8
mult-session registration question about dealing with drop-out and drop-in

#1372 smbaca opened 4 months ago
2
Get correct centers of mass from rois.com even when swap_dim is True in get_contours

#1370 ethanbb closed 4 months ago
6
caiman manager install fails

#1369 smbaca closed 4 months ago
5
Question/issue with register_multisession

#1368 JohnStout closed 4 months ago
1
Make Keras 2 available for TensorFlow 2.16.1

#1367 ethanbb opened 5 months ago
5
Added bokeh implementation of view_quilt

#1365 salehtahini closed 4 months ago
3