-
The `embed` command fails as follows:
```
$ ontogpt -vvv embed "test"
INFO:root:Logger root set to level 10
INFO:root:API KEY path = /home/harry/.config/ontology-access-kit/openai-apikey.txt
IN…
-
Screenshot:
Maybe the three-backtick thing doesn't work inside < details >? or maybe it doesn't work if there are any spaces before it?
The source is in https://github.com/monarch-initiative…
-
Hello,
I tried to specify model in the extraction but ontogpt can't recognize it.
`ontogpt extract -t mytemplate -i mytext.txt -m gpt-3.5-turbo-16k`
ERROR:ontogpt.clients.openai_client:OpenAI…
-
Hello @caufieldjh and @cmungall,
I'm reaching out to inquire whether ontoGPT could potentially offer additional command line options to display the raw prompt that's being passed to the language mo…
-
I noticed in the course of re-running the BC5CDR evals that the process was encountering the term "panic attacks" very frequently. As in, hundreds of times. This term doesn't appear in the test set th…
-
It says name 'OPENAI_MODELS' is not defined
![image](https://github.com/monarch-initiative/ontogpt/assets/72062105/a935cb07-a8b1-42c6-8154-36ef89c211d5)
-
Many thanks for creating `ontogpt`. Is it correct that if I use the `mendelian_disease.Symptom` template, I should be able to extract HPO phenotype terms from text? I attempted this by creating a file…
-
Hello @cmungall, I was trying to install and test ontogpt but I was not able to proceed further because of the importlib issue shown below. It seems that it keeps searching for the python library call…
-
Hi @cmungall , thanks a lot for this library, it is quite interesting
I am trying to import and use `ontogpt` from other python projects and am facing issues with the dependencies, such as:
* Erro…
-
Trying to get output in ttl or owl format for pubmed-annotate fails with a few different errors.
Running something like the following:
```
ontogpt -vvv pubmed-annotate -t ibd_literature "irritable …