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Right now we have it under 'protein transport', which is not correct, the targeting is separate from the transport.
(We also need to look into whether 'targeting' is in scope for GO; usually protein…
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Is the latter just the former imported into QIIME2? Or are there other quality control changes?
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Hi,
I would like to extract plant mitochondrial reads from the whole genome Oxford Nanopore? Do you have any idea which software-related for this? Like GetOrganelle for Illumina reads.
Thank you.
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organelle_PBA step : blasr is not working. I tested that blasr tool is working but not in the Organelle_PBA.
data structure:
dir "test" has the fastq file, reference file
outdir (-o) is artha_ch…
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In the vein of trying to provide concrete use cases, I thought I'd capture something on github that I knew we'd eventually want. A subset of http://www.ebi.ac.uk/cmpo/CMPO_0000309 might work:
![scre…
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## Improvement
- [x] Remove the exprs data from the table
- [x] Add axes on the PCA plot
- [x] Either remove the t-SNE tab or add the plot
- [x] Make line profile axes label smaller
- [x] Line p…
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The GO intends to add many logical axioms to cell components for spatial relations, based on information curated in Reactome: https://github.com/geneontology/go-ontology/issues/16785
For this we in…
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Hello,
I am trying to use NOVOPlasty to assemble an hexapod mitogenome from 150 bp paired reads. Contig is fine until a point where a 79bp sequence is indefinitely repeated at the end of the contig…
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Hi,
I am analyzing the p- and a-contigs of a FALCON assembly, and within the p-contigs I see that there are canonical linear contigs (e.g. 003655F), circular contigs (3702) and linear "R" contigs (00…