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Folks I've been finding LOTS of orphaned dockers out on the nodes lately. Killing them off is somewhat automated but due to my being a very careful person I still manually review the process before I …
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```
It would be good for torque jobs to support the "module load" command, and for
it to be mentioned in the online documentations.
```
Original issue reported on code.google.com by `bjp...@unimelb…
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This issue has come up multiple times before, but I just ran into this issue again trying to run LiFE on a tractogram with 1,000,225 streamlines. Did we have a fix for this?
See error log:
+ exp…
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Hi,
Thanks for the nice tool! I have a question how to disable Docker when running the .yaml?
Here's the error information:
cwltool.errors.WorkflowException: Docker is not available for this to…
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Echoing out the `JUPYTERHUB_OAUTH_SCOPES` and `JUPYTERHUB_OAUTH_SCOPES` environment variables from JupyterHub jobs created by batchspawner, these values appear incorrect.
The current solution I'm …
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Dear All,
While trying to fix pbs_mom behaviour to preserve resource usage information
when mom gets restarted with -p option i came across code between USESAVEDRESOURCES define blocks.
My question…
lflis updated
11 years ago
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Hi! I am trying to align my RNA-Seq reads to the human genome using STAR. I'm using the following syntax:
#PBS -l nodes=3:ppn=4,vmem=80gb,walltime=03:00:00
STAR --runThreadN 12 --runMode genomeGe…
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> Mel, @mmelendrez
> Hope everything is well. I had a question about your reworking of the RIID pipeline for pathosphere. Is it being configured to use a cluster? The way it is configured now on p…
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We got a [bug report in discourse](https://discourse.osc.edu/t/bug-updated-ondemand-interactive-apps-spill-over-to-other-interactive-apps-on-submission/760) with some strange behaviour with PBS.
What…
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As seen in #296, I really don't think it is reasonable that we ask the contributor to create/edit the snippets for all the different site permutations. I think @mikerenfro went above and beyond to do …