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When I call next_batch, the process froze forever.
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I've checked the V1 and it seems a good take. Are the models available for this V2?
Is this project in active development? If so, how could I help?
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We have a pdb file with the La metal as a ligand
and when we run we get this error:
![im…
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@cthoyt brought up an interesting point in https://github.com/sorgerlab/indra/pull/1262#issue-603695782 about assumptions of polarity for statements derived from agonist and antagonist relations. We s…
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Hello:
I have a protein receptor sequence file r.fasta, two protein ligand sequence files a.fasta and b.fasta and two peptide chains pep1 and prp2 selected from b.fasta. I wish to compare the strengt…
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[Siebenmorgen, Till, and Martin Zacharias. “Computational Prediction of Protein–Protein Binding Affinities.” *Wiley Interdisciplinary Reviews: Computational Molecular Science* 10, no. 3 (2020).](https…
cramg updated
3 years ago
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Hello, glad to see your excellent work!
I encountered a TypeError: string indices must be integers when I tried to reproduce the result of protein-ligand binding affinity prediction using command `py…
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Great paper! Here are a few items for your consideration...
page 20, 5 lines above section 7: practise-->practice
page 22, second bullet: cyro-->cryo
page 22, first bullet in Affinity data ("…
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This is one @[example](https://github.com/choderalab/mcce-charges/tree/master/testing/Cobimetinib/4AN2_together) of how we'll get the ΔΔG
![image](https://cloud.githubusercontent.com/assets/8505813/…
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Dear DeepFRI developers,
There seems to be an error in the saliency maps when the latest release and the downloadable models are used. For example in the case of 2PE5 in the Nat. Comms paper for the…
ga01 updated
3 months ago