dauparas LigandMPNN issues

dauparas / LigandMPNN

MIT License

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issues

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fine-tuning on custom data

#38 norsedrunkensailor opened 4 days ago
0
Fix fixed_residues_multi and redesign_residues_multi bug

#37 jasonlin90125 opened 1 month ago
1
Installs cuda compat in the docker image so that the GPU will be used on g cloud.

#36 BrandonFrenz closed 1 month ago
0
Enable easy running outside of installation directory.

#35 roccomoretti opened 2 months ago
0
Design a new sequence and pack side chains with RFNA Output

#34 Leo-T-Zang closed 3 months ago
1
definition of per-residue label for membranempnn

#33 ShuhaoGithub opened 4 months ago
0
Ligand Recognition

#32 pikaha2410 opened 5 months ago
5
Making training files

#31 lcesaire3 opened 5 months ago
0
Alternate protonation states cause sequence truncation

#30 faraguna-ginkgo opened 5 months ago
0
Definition of different types of residues in membraneMPNN

#29 ShuhaoGithub opened 6 months ago
0
Please, output 'probs' and 'log_probs'

#28 agarrubio opened 6 months ago
0
No ligand atoms parsed

#27 agarrubio closed 6 months ago
1
Multiple sequence design for one target

#26 lzygitk7 closed 6 months ago
2
Typo in README.md file and argparser help text for example of fixing/redesigning/parsing specific chains

#25 amelie-iska closed 6 months ago
1
2 design a new sequence and pack side chains (return 4 side chain packing samples)

#24 amelie-iska opened 6 months ago
1
Problem with Ligand

#23 jmProteins2024 opened 7 months ago
6
Timeout for wget model parameters

#22 merttopcu-rhea closed 7 months ago
4
Added instructions for downloading pre-reqs on Digital Research Alliance of Canada (DRAC) clusters

#21 ISDementyev closed 7 months ago
1
Can I run LigandMPNN on my Windows Laptop?

#20 emilyrkang closed 6 months ago
2
Segmentation fault when winning on MAC oc

#19 Vepricov closed 6 months ago
1
index 0 is out of bounds for dimension 1 with size 0

#18 sherryliu987 opened 7 months ago
3
tree module in python can't be installed

#17 Rojo14 closed 7 months ago
5
feat: pip installable and w/ hydra

#16 YaoYinYing closed 5 months ago
6
pip-installable package and use hydra

#15 YaoYinYing closed 7 months ago
0
build(deps): add requirements.txt file

#14 TheLostLambda closed 7 months ago
1
Add a requirements.txt file

#13 TheLostLambda closed 7 months ago
1
--chains_to_design_multi and --symmetry_residues_multi

#12 netogallo opened 8 months ago
0
TypeError: can't multiply sequence by non-int of type 'Forward'

#11 al979 closed 7 months ago
3
Designing HOMO-OLIGOMER error

#10 Lyang556 opened 8 months ago
1
If redesigned_residues_multi is supplied, the list of residues to redesign in not correct

#9 oteri opened 8 months ago
4
If fixed_residues_multi is supplied, the list of detectef fixed residues is wrong

#8 oteri opened 8 months ago
0
Typo in overall_confidence definition in README.md

#7 hippolytej opened 8 months ago
0
Fixed Residues Not Working for Multiple Chains

#6 amelie-iska closed 9 months ago
2
Training code

#5 niklaskristiansen opened 10 months ago
2
Docked Ligands Being Excluded Due To 0 Occupancy Value

#4 CharlieJohnson98 closed 9 months ago
3
LigandMPNN dataset

#3 bio-rat closed 9 months ago
1
Output an npz file with 20 mutation probabilities

#2 PKU-Leroy opened 10 months ago
5
Full-atom output PDB

#1 BJHardy opened 10 months ago
4