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Process 'MSFragger' finished, exit code: 1
Process returned non-zero exit code, stopping
~~~~~~~~~~~~~~~~~~~~
Cancelling 31 remaining tasks
08:43:59 ERROR: Error writing log to file
java.nio.chan…
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Running FragPipe v.14.0 with Philosopher version: 3.3.11 (build 1601497354) on Win10 and label-free quantification mode with MBR.
I got a protein.tsv and combined-protein.tsv with the top protein wit…
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Hi there,
I reported this error:
Cancelling 7 remaining tasks
Processing interrupted, stostopping WorkspaceClean
Process 'IonQuant' finished, exit code: 1
Process returned non-zero exit cod…
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Dear all,
I am trying to analyze tims tof pro data with Open search and I ran into this error described below.
INFO[01:07:14] Executing Filter v3.4.13
INFO[01:07:14] Processi…
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- Describe the issue or question:
- with fragpipe v15, quant label can not be recognized in TMT-integrator
No known quant label types match labeling
reagent names in given annotations.
- Uploa…
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Dear developers,
I am getting this error when performing a search on timsTOF data. What does it mean? Thank you.
```
>>>>>>>>|- ERROR in [bdal-logconf:logger_config.cpp:379] - XML analysis erro…
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Hello MSFragger team,
I try to use MSFragger (through FragPipe) to search phosphorylation data from Bruker’s TimsTOF pro. However, all intensity values for proteins and peptides are 0 in the search…
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I am trying to run PTM-Shepherd v 0.3.4 over a linux cluster:
```
uname -a
Linux halting-armadillo-deep-learning-tools 3.10.0-1062.9.1.el7.x86_64 #1 SMP Fri Dec 6 15:49:49 UTC 2019 x86_64 x86_64 x8…
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AssertionError
Process 'SpecLibGen' finished, exit code: 1
Process returned non-zero exit code, stoppingEasyPQP convert error END
~~~~~~~~~~~~~~~~~~~~
Cancelling 1 remaining tasks
Here is the…
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**Describe the bug**
I am following the instructions on "Running a FragPipe-equivalent workflow on Linux", here: https://msfragger.nesvilab.org/tutorial_linux.html
I've run my analyses on the exac…