-
### Project short name:
MerfishCorticalLayer
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files:
* Google Drive:
* Publication: [Spatial Single-cell Analysis Decodes Cortical L…
-
Relative to https://github.com/mc2-center/data-models/issues/49 and https://github.com/mc2-center/data-models/pull/66
Draft of the MC2 data model dictionary, using GitHub pages deployment, is here:…
-
ElecFeX is a MATLAB-based Electrophysiological Feature eXtraction toolkit for current-clamp recordings. The graphical user interface (GUI) of ElecFeX was designed to analyze electrophysiological recor…
-
Hi Tinyi,
Quick question. Are the inferred cell-type specific expression matrices normalized for varying library size of samples/spots? In the vignette for downstream analysis you suggest performin…
-
Hello!
When I was using scTE, I encountered some problems and I wonder if I can get some advice.
### Question 1: Preprocessing BAM Files with Filtered Barcodes from CellRanger Output
I'm ex…
-
Project Title: Systematic comparative analysis of single cell RNA-sequencing methodsProject UUID: 88ec040b-8705-4f77-8f41-f81e57632f7dWrangler/s: Chris,,Villarreal; William,G,Sullivan; Parisa,,Nejad; …
-
Dear Antonio, I'm using your fantastic tool for the analysis of a melanoma single cell datasets. Everything works just fine, except for a sample. Its the same cell line with different treatments, almo…
pgm99 updated
5 months ago
-
Hi,
Sorry to bother you again.
I'm having difficulties interpreting the provided differential expression values.
I took values from the ASD_DEGcombined.csv file, which seem to be coherent wit…
-
Dear Author,
I am using this script for analysis:
import SEVtras
SEVtras.sEV_recognizer(input_path='/home/yeziyang/Sc', sample_file='/home/yeziyang/Sc/Sc1_LN', out_path='/home/yeziyang/Sc/outputs…
-
- [ ] a. Correlation of RAS pathway signature gene expression with mesenchymal exposure values of primary tumors.
- [ ] b. Correlation of JUN/FOS target gene expression mesenchymal exposure values of…