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Hi!
First off, thank you for this analysis tool!
I am analyzing some Perturb-Seq data and have followed the vignette. I ran Mixscale_Scatterplot and interestingly the perturbation score seems p…
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How should we approach this dataset?
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https://doi.org/10.1101/170761
> How to extract informative features from genome sequence is a challenging issue. Gapped k-mers frequency vectors (gkm-fv) has been presented as a new type of featur…
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From the 2023-10-12 Reactome2GO meeting at NYU:
In the [nuclear signaling by ERBB4 model](https://reactome.org/PathwayBrowser/#/R-HSA-1236394&SEL=R-HSA-1251985&PATH=R-HSA-162582,R-HSA-9006934), the…
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Hello,
After running my code I found that the transcription factor I wanted did not appear in the results. And since I have used some grn predict tools before, It may be better to use one tool unif…
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Hi developers,
Thanks a lot for providing a powerful tool to analyze spike-in chip-seq data. In your paper, I noticed that you always use only one antibody (such as histone modification), however, …
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**Describe the bug**
Was downloading XML and CSV files for all the papers published in the year 2021 for the query "Transcription factors", the limit was set to 100k papers, and hits were 99k, ideall…
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A user (Andrew Butterworth) reported a bug with a media upload for a file of 1h7m duration showed a transcription estimate of 7m. (the file was an mp4 if that makes a difference).
Needs further inv…
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GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000413 protein peptidyl-prolyl isomerization
GO:0001932 regulation of protein phosphorylation
GO:0001933 negat…
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Thank you for developing the excellent iTAK software! After using it, I have some questions that I would like to ask for your guidance:
(1) The reference database used by iTAK has not been updated …