-
Hi,
I am trying to ru MixMir, now working with your testdata, but I get this error with my own data.
('No refseq ID detected', '>TRINITY_GG_86181_c0_g1_i4')
**Can MixMir be run with my own fasta …
-
### Feature description
We now have an easy way to add publications for analyses. Here are the three i know of:
- juglans regia genome - https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.13207
…
-
https://doi.org/10.1038/s41586-024-07769-3
Please keep this checklist for curation of a new study.
- [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before cur…
-
Can prokka be used for transcriptome annotation?
-
It seems that ensembl appends '.X' to the transcript id denoting the version of that transcript.
http://sites.tufts.edu/cbi/files/2013/01/Introduction2ENSEMBL.pdf
https://www.biostars.org/p/102769/
…
-
My workflow keeps failing at the reference_assembly:map_reads step:
```
ERROR ~ Error executing process > 'pipeline:reference_assembly:map_reads (1)'
Caused by:
Process `pipeline:reference_a…
-
Dear Geo,
I had different assembled transcriptomes depending by the usage of STAR or HISAT2 with the latest version of stringtie. You can see a screenshot of a region I am interested in.
![strti…
-
Hi,
When I try to run MOP2 with "genome" as the reference type instead of "transcriptome" it doesn't create results. But it seems to be running (with the reference genome I provide) using "transcript…
-
**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
bulk mode
**Describe the bug**
```
Version Info: This is the most recent version of salmon.
### salmon (sele…
-
I’m experiencing **Error executing process > 'pipeline:makeReport (1)'** this same issue across multiple versions. I’ve tried various versions, starting from the lowest to the newest wf-transcriptomes…