pachterlab sleuth issues

pachterlab / sleuth

Differential analysis of RNA-Seq

http://pachterlab.github.io/sleuth

GNU General Public License v3.0

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issues

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Fix typo in documentation

#285 mschilli87 opened 2 months ago
0
Simple Error in measurement_error.R

#284 pcp2117 opened 10 months ago
0
Error in model_exists(obj, null_model) : model 'reduced' not found

#283 ljz3216 closed 12 months ago
0
TPM values depend on Combination

#282 keksundso opened 1 year ago
2
no replications

#281 xingjianfeng100 opened 1 year ago
0
Issue with reading kallisto results

#280 rmsalatino opened 1 year ago
0
Fix external links in README.md

#279 asan-emirsaleh opened 1 year ago
0
Issue with simpleLoess

#278 asan-emirsaleh opened 1 year ago
4
Testing for interactions

#277 AlessandraSchnider opened 1 year ago
0
select_() was deprecated in dplyr 0.7.0.

#276 AlexGaithuma opened 1 year ago
1
Fix to sleuth_fit() in measurement_error.R

#275 pcp2117 opened 1 year ago
0
Error in H5Fopen(file, flags = flags, fapl = fapl, native = native) : HDF5. File accessibility. Unable to open file.

#274 martalopes5234 opened 2 years ago
2
Extract dendrogram clusters from `plot_transcript_heatmap`

#273 sbslee closed 2 years ago
1
Counts output from rpvg

#272 lsoldini opened 2 years ago
0
Identical standard errors

#271 adippolito12 opened 2 years ago
0
new release date?

#270 jsalignon opened 2 years ago
5
Appropriate Design Matrix

#269 StephenRicher opened 2 years ago
0
why you not filter the data firstly?

#268 hanguojun007 opened 2 years ago
1
plot_volcano bug

#267 hanguojun007 opened 2 years ago
0
Normalizing Kallisto abundances with sleuth

#266 ShwetaCh opened 2 years ago
1
normalizing est_counts Error in if (sum(filter_bool) == 0)

#265 heskad opened 2 years ago
0
sort by b or mean_obs?

#264 whiteorchid closed 2 years ago
3
model ift

#263 polarbearsmall closed 2 years ago
3
sorting most variant genes/transcripts in the heatmap

#262 polarbearsmall closed 2 years ago
0
Unable to download walkthrough data. Error 404

#261 merrideewouters opened 2 years ago
1
Drop hd5write.default import

#260 mschilli87 closed 2 years ago
1
R installation hangs on rdh5f issue

#259 jhdcate closed 2 years ago
20
subset not working as expected

#258 jvolkening opened 2 years ago
0
Sleuth-Error in check_target_mapping

#257 nmorf opened 3 years ago
3
data.table 1.12 incompatibility?

#256 johnstonmj opened 3 years ago
1
Error in UseMethod("filter_")

#255 helmutcarter closed 3 years ago
1
How to acquire "scaled_reads_per_base" to determine principal components

#254 bkramer88 opened 3 years ago
0
Error in rhdf5::h5ls(fname) : HDF5. Object header. Can't open object.

#253 mbartl13 opened 3 years ago
0
Running sleuth causes infinite data.table warning

#252 tiagobrc opened 4 years ago
4
Extract expression matrix (obs_norm) at the gene level

#251 tiagobrc opened 4 years ago
0
No beta with gene_mode = F

#250 jsalignon opened 4 years ago
0
device is out of space after executing multiple kallisto quant

#249 eilalan opened 4 years ago
2
result after sleuth_prep

#248 YyLu5 opened 4 years ago
0
dim(X) must have a positive length

#247 TommySchooner opened 4 years ago
0
install instructions outdated on github.io site

#246 maglet opened 4 years ago
0
data.table::dcast

#245 kunstner opened 4 years ago
1
Which data source is used for plot_pca?

#244 thorellk opened 4 years ago
0
sleuth_prep fails to summarize bootstraps

#243 dimitras opened 4 years ago
1
unable to export table from Shiny

#242 VPankievicz opened 4 years ago
1
problem installing sleuth

#241 Kappy2 closed 3 years ago
2
fix double-negation in gene_column check upon manual change of pval_aggregate in sleuth_object

#240 dlaehnemann opened 4 years ago
1
get_bootstrap_summary problem

#239 TatianaV12 opened 4 years ago
1
R (sleuth and shiny) ERROR: Text to be written must be a length-one character vector

#238 umasstr opened 4 years ago
0
zip file for vignette doesn't exist?

#237 marykthompson opened 4 years ago
2
kallisto quant killed

#236 umasstr closed 4 years ago
1