-
about 'np.where(livertumor == 2)' in preprocessing.py,
What does ‘livertumor == 2‘ mean?
-
Hi,
I am using the calculated data from STAR to infer the cancer type using TULIP.
There are many genes without expression value, and I encountered some mistake after running the command, which …
-
RNAseq z score calculations - especially in cohorts, like `pbta_all` which have many different kinds of brain tumors, or even more intense, openpedcan, using a flat z score across all #samples per ge…
-
What are the functions of generate_livertxt, generate_tumortxt and generate_txt in preprocessing.py respectively
-
LUNA16 is a better 3D dataset,the annotation xml files are pixel-wise,you can transform them into 3D npy files.
-
Hi there! When I ran the bayesNMF code provided in your directory using a simulated cancer mutational catalog to en, I have encountered the following problem after the 30X optimization has finnished:
…
-
I have a patient with 2 normal fastq. The recal step fails due to multiple files listed as "Normal" in the patient_ID_conversions table
```
- SAMPLES=SC299898_CGCTGATC_L002 SC299898_CGCTGATC_L006 S…
-
#Team name :
JSNN
#team members name
benbouazza souhaib
ikanne nada
hanan saidi
# Project Description:
As you may already now tumors nowdays has been affected a lot of people among us ( …
-
There seems to be confusion surrounding the use of the GT and AD keys in the INFO field.
The GATK Mutect2 tool would produce a VCF file containing the following GT:AD values for a sample containing…
-
This is my first analysis and I ran FACETS on CT26 mouse tumors and Normal tissues (taken from literature). I obtain strange results because all the segments seems to be with 1 copy number (i expect…