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kids-first
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kf-cbioportal-etl
Repository of scripts used to convert dataservice metadata and DRC processed data into cbio portal loading format.
Apache License 2.0
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✏️ update paths, rerorg README for clarity
#65
migbro
opened
1 day ago
0
🚀 add pbta pnoc BIXU-3723
#64
migbro
closed
1 month ago
0
📝 update sample template to reflect new column addition
#63
migbro
closed
1 month ago
0
✨ Add Treatment Views to pbta_all
#62
migbro
closed
2 months ago
0
🔧 Fix Missing Field
#61
migbro
closed
2 months ago
1
🔨 Update PBTA 20240322
#60
migbro
closed
5 months ago
0
✏️ add teachey
#59
migbro
closed
5 months ago
0
✏️ update openpedcan desc
#58
migbro
closed
5 months ago
0
🚀 Add OpenPedCan v15
#57
migbro
closed
5 months ago
0
🛠️ refactor/rename Lupo study to new ID
#56
migbro
closed
6 months ago
0
✨ add server scraper
#55
migbro
closed
6 months ago
0
🚀 Add dbgap chdm, Update Mioncoseq
#54
migbro
closed
8 months ago
0
🔧 Fixes for numpy pandas compatibility
#53
migbro
closed
10 months ago
0
🔨 Added new file type
#52
migbro
closed
10 months ago
1
🚀 Update configs
#51
migbro
closed
1 year ago
0
🛠️ clin data refactor
#50
migbro
closed
1 year ago
0
Design / make recommendations for automating manual steps in current ETL process
#49
pieterlukasse
opened
1 year ago
0
Moving/inconsistent data locations
#48
pieterlukasse
opened
1 year ago
1
🛠️ New configs, bug fixes, improvements
#47
migbro
closed
1 year ago
0
Feature/switch gatk cnv to cbio in wide format
#46
sakshamphul
closed
1 year ago
3
Update studies to include latest fields and gene annnotation
#45
migbro
opened
1 year ago
0
Improve RNASeq z-score calculations
#44
forus
opened
1 year ago
4
Feasibility of adding canine to cBio
#43
migbro
opened
1 year ago
0
pbta_all added fields request
#42
migbro
closed
11 months ago
5
🚀 OpenPedcan v12 Release
#41
migbro
closed
1 year ago
0
Review Study + ETL Google Sheet and Edit
#40
migbro
opened
1 year ago
1
No well-defined / no consistent sources of clinical data
#39
pieterlukasse
opened
1 year ago
2
Manual and rushed study review process
#38
pieterlukasse
opened
1 year ago
0
Instance to create load packages and upload into buckets
#37
pieterlukasse
opened
1 year ago
1
Lack of an existing "somatic event ID" to tie DNA and RNA data together a.o.
#36
pieterlukasse
opened
1 year ago
2
Create a kanban board
#35
migbro
closed
1 year ago
1
🔨 Study Config Updates and bug fixes
#34
migbro
closed
1 year ago
0
Feature/mb missed updates improvements
#33
migbro
closed
1 year ago
0
🛠 update sv format
#32
migbro
closed
1 year ago
0
fix the cpp bug
#31
sakshamphul
closed
1 year ago
2
🛠 add open chordoma, upgrade sv
#30
migbro
closed
1 year ago
1
🛠 Ref updates, tool updates, new study configs
#29
migbro
closed
1 year ago
0
🔧 fixed pbta config
#28
migbro
closed
1 year ago
0
Add an argument to let user decide the computation method: C++/R
#27
sakshamphul
closed
1 year ago
1
Add Utility scripts from openpbta study run
#26
sakshamphul
closed
1 year ago
0
Zscore
#25
sakshamphul
closed
1 year ago
0
Add meninigioma study config file to the ETL
#24
sakshamphul
closed
1 year ago
0
Feaure/mb add timeline
#23
migbro
closed
1 year ago
0
Feature/open pedcan v11
#22
migbro
closed
2 years ago
0
🎉 Feature/mb add aml sd z6mwd3h0 2018
#21
migbro
closed
2 years ago
1
🎉 Added config file for new study load os_sd_zxjffmef_2015
#20
migbro
closed
2 years ago
0
🛠 updated tumor types conversion
#19
migbro
closed
2 years ago
0
⬆️ Feature/update ot, 🐛 bug fixes
#18
migbro
closed
2 years ago
0
🎉 Feature/add chordoma
#17
migbro
closed
2 years ago
0
🧓 Mb openpbta load
#16
migbro
closed
2 years ago
0
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