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We're down 303,343 edges from Panther in the most recent build, and interestingly, it's not a mapping issue, because dangling edges for Panther is also down by 100k rows.
The first thing we should…
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https://mp.weixin.qq.com/s/gjMjnfoWj9rQjiFWqEnz1w
ixxmu updated
9 months ago
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Hello,
Thanks again for the awesome framework!
Our lab is working on a project that involves cross-species comparisons, and to start I'm looking to use SATURN to identify homologous cell type m…
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Ensembl: +23.71%
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We have just assembled a new Macrobrachium australiense shrimp genome using short illumina reads. We ran this genome using fcs-genome/0.4.0 to identify contaminants and discovered that a very large nu…
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While testing for #296, I found that `reactome_mysql_to_kg_json.py` fails:
```
/home/ubuntu/kg2-venv/lib/python3.7/site-packages/rdflib_jsonld/__init__.py:12: DeprecationWarning: The rdflib-jsonld…
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Hi all,
I keep getting this error while trying to run ExOrthist:
Error executing process > 'split_EX_pairs_to_realign (1)'
Caused by:
Process `split_EX_pairs_to_realign` input …
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On a fresh conda/mamba installation with:
```
$ mamba create -n genomepy genomepy
```
* version
```
(genomepy)$ genomepy --version
genomepy, version 0.16.0
```
* Test search command
```
(…
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**This is a batch request for term addition, hence the table**
Daphnia magnaAnatomical ID | System/structure (Display Name) | Parent Structure | definition | definition source | parent term | synon…
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I will soon overhaul the way the bridges between Uberon/CL and foreign resources (mostly foreign ontologies but not only) are handled. Before I do that, here is an inventory of those bridges as they c…