RTXteam RTX-KG2 issues - Githubissues

RTXteam / RTX-KG2

Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)

MIT License

34 stars 9 forks source link

issues

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`infores:nddf-umls` is deprecated

#391 ecwood opened 1 day ago
0
Evaluate Which Dependencies Are Actually Needed

#390 ecwood opened 5 days ago
0
Should we archive old code in the KG2 repository?

#389 ecwood opened 5 days ago
0
Evaluate How to Handle the Problematic Edges Returned in ARAX Query for "What Causes Autism?"

#388 ecwood opened 5 days ago
1
Remove Ontobio from the Build System

#387 ecwood opened 5 days ago
0
Consider Removing Retracted Papers from RTX-KG2

#386 ecwood opened 5 days ago
0
Missing Source Predicates

#385 ecwood opened 5 days ago
0
SemMedDB (Final) Update

#384 ecwood opened 6 days ago
0
DrugBank Drug Interaction Sentences Seem to Be of a Standard Type

#383 ecwood opened 6 days ago
6
Update DrugBank

#382 ecwood opened 6 days ago
0
Biolink v4.2.0 Incompatibilities

#381 ecwood opened 1 week ago
5
Infores Registry is Decoupled from Biolink Model

#380 ecwood opened 1 week ago
0
Need to Upgrade from Python 3.7

#379 ecwood opened 1 week ago
3
CI is Broken

#378 ecwood opened 1 week ago
0
incorrect subclass-of edge in KG2.9.0pre

#377 saramsey opened 1 month ago
0
TRAPI 1.5 validation error - result node binding attributes missing

#376 maximusunc closed 3 weeks ago
18
Build KG2.9.1

#375 acevedol opened 2 months ago
6
Update KG2 build process to the new (perhaps the latest) version of Neo4j

#374 saramsey opened 3 months ago
0
Compliance with Biolink 4.1.1 - Treats Refactor

#373 acevedol opened 3 months ago
0
Discrepancy on kg2-versions.md and biolink node on KG2.8.4

#372 acevedol opened 3 months ago
0
Error in Reactome Conversion

#371 acevedol closed 2 months ago
2
Error in DGIdb Conversion

#370 acevedol opened 3 months ago
1
Free text info from DrugBank

#369 dkoslicki opened 4 months ago
6
Error in rule Ontologies_Conversion

#368 acevedol opened 4 months ago
0
Single Exon node with the name `Exon`

#367 dkoslicki opened 4 months ago
3
Add data description and provenance for "SMPDB PubMed annotations" (`SMPDB_pubmed_IDs.csv`)

#366 d33bs opened 5 months ago
2
Add retry capabilities for `kg2_util.download_file_if_not_exist_locally` to avoid systemic failures

#365 d33bs opened 5 months ago
2
Remove DOID subclass_of edges during ingestion of DOID

#364 saramsey opened 5 months ago
2
Look into PathWhiz scripts to make sure there are proper links back to SMPDB pathways

#363 saramsey opened 5 months ago
0
Adjust table name `Regulation_2_summation` to `Event_2_summation` for `reactome_mysql_to_kg_json.py` (extension of #297)

#362 d33bs closed 2 months ago
1
Bazillion Cardiolipin Biosynthesis pathways

#361 dkoslicki opened 5 months ago
1
Error in Ontologies_Conversion

#360 acevedol opened 5 months ago
5
Add table of contents to the README

#359 dkoslicki opened 5 months ago
1
knowledge_level on all edges?

#358 edeutsch opened 5 months ago
11
strange subclass_of edge in KG2.8.1pre

#357 saramsey opened 6 months ago
2
Inverted UMLS (NCIT) Edge

#356 acevedol opened 6 months ago
22
biolink-model 4.0.0 will move the location of the biolink-model.owl.ttl file into a subdirectory and will have a name change (dashes to underscores)

#355 sierra-moxon opened 7 months ago
0
add checklist item on KG2pre build issue template for DNS update

#353 saramsey opened 8 months ago
1
complete KG2.8.6pre record in kg2-versions.md

#352 saramsey opened 8 months ago
0
UMLS Re-ETL

#351 ecwood closed 9 months ago
0
Should we have statement qualifiers on certain edges?

#350 ecwood opened 9 months ago
2
Build KG2.8.6

#349 ecwood opened 9 months ago
2
UniProtKB shouldn't have KB in the CURIE prefix?

#348 dkoslicki closed 9 months ago
2
Consider ETLing WikiPathways and SIDER

#347 ecwood opened 10 months ago
0
Broken links in RTX-KG2 results

#346 dkoslicki closed 9 months ago
1
KG2 Validation issue

#345 edeutsch closed 10 months ago
4
Why didn't we get UMLS:C0572088 with CHV?

#344 saramsey opened 10 months ago
2
Issue with `ordo.owl` URL

#343 ecwood opened 11 months ago
2
Merge JSON Lines code

#342 ecwood closed 11 months ago
0
Failure in `setup-python37-with-pip3-in-ubuntu.shinc`

#341 ecwood opened 11 months ago
0