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RTXteam
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RTX-KG2
Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
MIT License
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Merge JSON Lines code
#342
ecwood
closed
11 months ago
0
Failure in `setup-python37-with-pip3-in-ubuntu.shinc`
#341
ecwood
opened
11 months ago
0
DRUGBANK:drug-interaction is incorrectly being mapped to biolink:physically_interacts_with
#340
saramsey
opened
11 months ago
2
KG2.8.4pre Edge Doesn't Have qualified_object_direction
#339
ecwood
opened
11 months ago
5
`run-simplify.sh` fails if there is no major/minor release specified
#338
ecwood
opened
11 months ago
0
SMPDB Has Lots of Duplicate Nodes
#337
ecwood
closed
9 months ago
2
`binlog` Files in `/var/lib/mysql` Take Up a Ton of Space
#336
ecwood
opened
11 months ago
2
DGIdb Extraction Tends to Fail
#335
ecwood
opened
11 months ago
0
Improve Code Documentation/Comments
#333
ecwood
opened
11 months ago
0
Improve File Name Standardization
#332
ecwood
closed
9 months ago
2
`KG2.8.4pre` Code Release
#331
ecwood
closed
11 months ago
0
Source Predicates Missing From YAML Config File
#330
ecwood
closed
11 months ago
1
miRBase URL Change
#329
ecwood
closed
11 months ago
1
Issue in `Simplify` During `KG2.8.4pre` Build
#328
ecwood
opened
11 months ago
3
`setup-kg2-build.sh` Fails to Install `pip`
#327
ecwood
closed
11 months ago
7
Address `biolink:InformationContentEntity` in KG2
#326
ecwood
opened
11 months ago
1
DisGeNet edge with empty PMID
#325
saramsey
closed
11 months ago
4
Address `biolink:OrganismalEntity` in KG2
#324
ecwood
opened
11 months ago
2
Consider Removing Deprecated Code from Repository
#323
ecwood
opened
11 months ago
0
KG2 README is Out of Date
#322
ecwood
opened
11 months ago
0
Design JSON Lines Representation for KG2
#321
ecwood
closed
9 months ago
28
`validate_curies_to_urls_map_yaml.py` is validating CURIEs not URLs
#320
ecwood
opened
11 months ago
3
Update `validate_provided_by_to_infores_map_yaml.py` to Work with Newer YAML File
#319
ecwood
opened
11 months ago
0
multi-item resource_id
#318
edeutsch
opened
11 months ago
3
Why are CHEMBL.TARGET-UniProtKB cross references given the predicate `has_part`?
#317
ecwood
opened
11 months ago
1
Consider Restructuring UMLS/Ontology Build Process
#316
ecwood
opened
11 months ago
22
Concerned with the Number of Deprecated Nodes in RTX-KG2
#315
ecwood
closed
11 months ago
8
Merging CI into KG2.8.4 Code
#314
ecwood
closed
12 months ago
0
CI for KG2?
#313
ecwood
closed
12 months ago
3
Build KG2.8.4
#312
ecwood
opened
12 months ago
4
Upgrade ChEMBL?
#311
ecwood
closed
10 months ago
3
SemMedDB Conversion Fails
#310
ecwood
closed
11 months ago
4
How Should We Be Handling Required `slots` on Nodes?
#309
ecwood
opened
1 year ago
1
Validator Scripts Need to Check for Exclusion of Abstract Classes
#308
ecwood
opened
1 year ago
0
Drop LOINC from KG2
#307
saramsey
closed
10 months ago
4
validate_predicate_remap_yaml.py needs to validate qualifiers
#306
saramsey
opened
1 year ago
1
issues with predicate-remap.yaml regarding qualifiers
#305
saramsey
opened
1 year ago
8
KEGG Conversion Issue
#304
ecwood
closed
11 months ago
9
Food Ontology Import Issue
#303
ecwood
opened
1 year ago
11
Update to Biolink v3.5.0
#302
ecwood
opened
1 year ago
12
What version of Biolink are we planning to use in the next build?
#301
ecwood
opened
1 year ago
5
UMLS Conversion Script (Multi Ont) Fails
#300
ecwood
closed
11 months ago
17
UniprotKB Conversion Fails
#299
ecwood
closed
11 months ago
5
RepoDB Conversion Script Fails
#298
ecwood
closed
11 months ago
1
Reactome Conversion Script Fails
#297
ecwood
closed
11 months ago
4
Conversion Script Errors
#296
ecwood
closed
11 months ago
3
Error in DrugCentral Extraction
#295
ecwood
closed
11 months ago
2
Error in SemMedDB Extraction Script
#294
ecwood
closed
11 months ago
4
Error in Unichem Extraction Script
#293
ecwood
closed
11 months ago
5
Update UMLS to UMLS2023AA
#292
ecwood
closed
10 months ago
1
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