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RTXteam
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RTX-KG2
Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
MIT License
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Address `biolink:OrganismalEntity` in KG2
#324
ecwood
opened
1 year ago
2
Consider Removing Deprecated Code from Repository
#323
ecwood
opened
1 year ago
0
KG2 README is Out of Date
#322
ecwood
opened
1 year ago
0
Design JSON Lines Representation for KG2
#321
ecwood
closed
1 year ago
28
`validate_curies_to_urls_map_yaml.py` is validating CURIEs not URLs
#320
ecwood
opened
1 year ago
3
Update `validate_provided_by_to_infores_map_yaml.py` to Work with Newer YAML File
#319
ecwood
opened
1 year ago
0
multi-item resource_id
#318
edeutsch
opened
1 year ago
3
Why are CHEMBL.TARGET-UniProtKB cross references given the predicate `has_part`?
#317
ecwood
opened
1 year ago
1
Consider Restructuring UMLS/Ontology Build Process
#316
ecwood
opened
1 year ago
22
Concerned with the Number of Deprecated Nodes in RTX-KG2
#315
ecwood
closed
1 year ago
8
Merging CI into KG2.8.4 Code
#314
ecwood
closed
1 year ago
0
CI for KG2?
#313
ecwood
closed
1 year ago
3
Build KG2.8.4
#312
ecwood
opened
1 year ago
4
Upgrade ChEMBL?
#311
ecwood
closed
1 year ago
3
SemMedDB Conversion Fails
#310
ecwood
closed
1 year ago
4
How Should We Be Handling Required `slots` on Nodes?
#309
ecwood
opened
1 year ago
1
Validator Scripts Need to Check for Exclusion of Abstract Classes
#308
ecwood
opened
1 year ago
0
Drop LOINC from KG2
#307
saramsey
closed
1 year ago
4
validate_predicate_remap_yaml.py needs to validate qualifiers
#306
saramsey
opened
1 year ago
1
issues with predicate-remap.yaml regarding qualifiers
#305
saramsey
opened
1 year ago
8
KEGG Conversion Issue
#304
ecwood
closed
1 year ago
9
Food Ontology Import Issue
#303
ecwood
opened
1 year ago
11
Update to Biolink v3.5.0
#302
ecwood
opened
1 year ago
12
What version of Biolink are we planning to use in the next build?
#301
ecwood
opened
1 year ago
5
UMLS Conversion Script (Multi Ont) Fails
#300
ecwood
closed
1 year ago
17
UniprotKB Conversion Fails
#299
ecwood
closed
1 year ago
5
RepoDB Conversion Script Fails
#298
ecwood
closed
1 year ago
1
Reactome Conversion Script Fails
#297
ecwood
closed
1 year ago
4
Conversion Script Errors
#296
ecwood
closed
1 year ago
3
Error in DrugCentral Extraction
#295
ecwood
closed
1 year ago
2
Error in SemMedDB Extraction Script
#294
ecwood
closed
1 year ago
4
Error in Unichem Extraction Script
#293
ecwood
closed
1 year ago
5
Update UMLS to UMLS2023AA
#292
ecwood
closed
1 year ago
1
Extraction Script Errors
#291
ecwood
closed
1 year ago
3
DGIdb Extract is Failing
#290
ecwood
closed
1 year ago
2
Deprecation Warning
#289
ecwood
opened
1 year ago
0
KGX Build Error
#288
ecwood
opened
1 year ago
1
Report Script is Not Behaving As Expected
#287
ecwood
closed
1 year ago
3
biolink:BiologicalEntity is now an abstract class?
#286
saramsey
opened
1 year ago
11
Test script
#285
lacevedo92
opened
1 year ago
1
Update README regarding clearing out kg2-*.json files before partial build
#284
saramsey
opened
1 year ago
0
Does RxNorm have "may treat" edges between drugs and indications?
#283
saramsey
opened
1 year ago
1
Very promiscuous node: pathwiz the culprit?
#282
dkoslicki
closed
1 year ago
10
Add a "domain_range_exclusion" Boolean property to KG2 edges
#281
saramsey
closed
1 year ago
24
Add CHV into ont-load-inventory.yaml
#280
saramsey
closed
1 year ago
3
Unsightly descriptions for Uniprot protein nodes in KG2 graph
#279
edeutsch
closed
1 year ago
5
kg_json_to_tsv.py seems to be putting out a TSV file with DOS line termination
#278
saramsey
closed
1 year ago
3
More specific categories for Interleukin 2 nodes (from LOINC/UMLS)
#277
amykglen
opened
1 year ago
1
Update drugbank
#276
acevedol
closed
1 year ago
5
Edges have a qualified direction of 'decreased' but no qualified predicate
#275
amykglen
opened
1 year ago
6
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