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RTXteam
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RTX-KG2
Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
MIT License
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gene -- causes -> phenotype edge from uniprot?
#415
amykglen
opened
1 day ago
1
KG2 listed as ingesting deprecated infores:biothings-multiomics-clinicaltrials
#414
amykglen
opened
1 day ago
2
add TOC to README
#413
dkoslicki
closed
3 weeks ago
0
ETL Drug Approvals KP into RTX-KG2.10.2pre
#412
saramsey
opened
3 weeks ago
0
Merging KG2.10.1 build code
#411
ecwood
closed
3 weeks ago
0
Node Normalization of conflation for T1D
#410
jaredroach
opened
1 month ago
0
Pull File from S3 Bucket when cURL Fails
#409
ecwood
opened
1 month ago
0
Build KG2.10.1
#408
ecwood
closed
3 weeks ago
2
PathWhiz?
#407
cbizon
opened
1 month ago
3
KL/AT Updates
#406
ecwood
opened
1 month ago
0
New Node Categorization System For Ontologies
#405
ecwood
closed
3 weeks ago
2
Upgrade to Biolink 4.2.1 for KG2.10.1
#404
ecwood
closed
3 weeks ago
1
Handling Mondo's `disease_responds_to` edges
#403
ecwood
opened
2 months ago
0
drug_regulatory_status_world_wide is not a valid predicate
#402
amykglen
opened
2 months ago
3
Should we ETL "SMILE" information for small molecule compounds, into KG2pre?
#401
saramsey
opened
2 months ago
3
Orphanet Curie Prefix Should Be Lowercase
#400
ecwood
closed
3 weeks ago
1
Code Cleanup
#399
ecwood
opened
2 months ago
3
ETL Clinical Trials KP
#398
ecwood
closed
3 weeks ago
1
Should `edge_id`'s use the `core_predicate` when there is no `qualified_predicate`?
#397
ecwood
opened
2 months ago
0
Subject Qualifiers
#396
ecwood
opened
2 months ago
0
Build KG2.10.0
#395
ecwood
closed
2 months ago
3
KG2.9.3 Code
#394
ecwood
closed
2 months ago
0
Remove Clinical Trials Information from KG2
#393
ecwood
closed
3 weeks ago
2
Edge Blocklist
#392
ecwood
closed
3 weeks ago
1
`infores:nddf-umls` is deprecated
#391
ecwood
opened
3 months ago
0
Evaluate Which Dependencies Are Actually Needed
#390
ecwood
closed
3 weeks ago
1
Should we archive old code in the KG2 repository?
#389
ecwood
closed
2 months ago
1
Evaluate How to Handle the Problematic Edges Returned in ARAX Query for "What Causes Autism?"
#388
ecwood
closed
3 weeks ago
2
Remove Ontobio from the Build System
#387
ecwood
closed
3 weeks ago
4
Consider Removing Retracted Papers from RTX-KG2
#386
ecwood
opened
3 months ago
0
Missing Source Predicates
#385
ecwood
closed
2 months ago
1
SemMedDB (Final) Update
#384
ecwood
opened
3 months ago
0
DrugBank Drug Interaction Sentences Seem to Be of a Standard Type
#383
ecwood
opened
3 months ago
6
Update DrugBank
#382
ecwood
opened
3 months ago
0
Biolink v4.2.0 Incompatibilities
#381
ecwood
opened
3 months ago
5
Infores Registry is Decoupled from Biolink Model
#380
ecwood
closed
2 months ago
1
Need to Upgrade from Python 3.7
#379
ecwood
opened
3 months ago
3
CI is Broken
#378
ecwood
closed
2 months ago
1
incorrect subclass-of edge in KG2.9.0pre
#377
saramsey
opened
4 months ago
0
TRAPI 1.5 validation error - result node binding attributes missing
#376
maximusunc
closed
3 months ago
18
Build KG2.9.1
#375
acevedol
opened
5 months ago
6
Update KG2 build process to the new (perhaps the latest) version of Neo4j
#374
saramsey
opened
6 months ago
0
Compliance with Biolink 4.1.1 - Treats Refactor
#373
acevedol
opened
6 months ago
0
Discrepancy on kg2-versions.md and biolink node on KG2.8.4
#372
acevedol
opened
6 months ago
0
Error in Reactome Conversion
#371
acevedol
closed
5 months ago
2
Error in DGIdb Conversion
#370
acevedol
opened
6 months ago
1
Free text info from DrugBank
#369
dkoslicki
opened
7 months ago
6
Error in rule Ontologies_Conversion
#368
acevedol
opened
7 months ago
0
Single Exon node with the name `Exon`
#367
dkoslicki
opened
7 months ago
3
Add data description and provenance for "SMPDB PubMed annotations" (`SMPDB_pubmed_IDs.csv`)
#366
d33bs
opened
8 months ago
2
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