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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
3.12.5 (main, Aug 6 2024, 19:08:49) [Clang 15.0.0 (clang-1500.3.9.4)]
CP…
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Hi there. I tried to build tasrkleat but the docker build fails because numpy is required by biopython but not installed. Installing numpy prior to biopython solves this issue and the image builds jus…
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Not knowing the history I am not sure, I think MotifDev.md should just be removed.
https://github.com/biopython/biopython.github.io/blob/master/wiki/MotifDev.md
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This is not necessarily a huge issue ,but neither Biopython nor the actual BLAST API mentioned parameters such as Max target sequence which is a parameter in the blastp Algorithm parameters section on…
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**Current Behavior**
Augur version 14 introduced `--tree-builder-args` which allows the user to create a tree with bootstrap values. IQTree has two methods bootstrapping trees, traditional bootstra…
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The first features is to provide to Biopandas mechanisms to represent the sequence data. We can say sequence as String object representing biological sequences with alphabets.
Examples: Sequence (Ge…
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Visualize the relative location of chlIDH and cobNST genes as diagram on a genetic locus. See some advices here (e.g. Biopython Genome Diagram):
https://www.biostars.org/p/337928/
https://www.bios…
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Reported by @vincentdavis on issue #1
Some images are scaled, e.g. in http://biopython.org/wiki/Phylo or its MediaWiki equivalent https://github.com/peterjc/peterjc.github.io/blob/master/wiki/Phylo.…
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Hello and thanks for your time,
I tried installing eggnog-mapper locally on my M1 Mac but have been getting an error code that I was hoping someone here could help to resolve.
I run the command …
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Hallo,
Thanks for developing and improving a great tool.
I got the following error while analyzing the isolated strain genome.
I am running on ubuntu with python version 3.8. Dfast was installed u…