nigyta dfast_core issues

nigyta / dfast_core

DDBJ Fast Annotation and Submission Tool

76 stars 13 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Prodigal version could not be determined

#48 mariafpv opened 3 days ago
2
Error while structural annotation

#47 kk1120 opened 5 months ago
4
Reference file does not exist

#46 ryobon-dev closed 6 months ago
2
Genbank-output: circular-tag

#45 xJane01x opened 1 year ago
1
no rRNA prediction using Barrnap

#44 gaworj opened 1 year ago
3
Possible for faster speed?

#43 Tonny-zhou closed 1 year ago
2
Process aborted due to an error in DBsearch.

#42 maxbranger closed 2 years ago
2
error pseudogene detection

#41 aistBMRG opened 2 years ago
1
Annotated genome as input

#40 iquasere closed 2 years ago
2
mapping contig IDs back to original names

#39 nick-youngblut opened 2 years ago
1
[[enhancement]] add post-link.sh to conda

#38 laxeye closed 2 years ago
2
pseudogene prediction

#37 eddykay310 opened 2 years ago
1
How to add manual annotation to DFAST annotation files.

#36 ywangbioinfo opened 2 years ago
0
HTTP Error 308: Permanent Redirect

#35 rzhan186 opened 3 years ago
3
Pseudogenes

#34 vappiah opened 3 years ago
10
Insertion Sequence

#33 vappiah closed 3 years ago
1
Import error

#32 blsteven closed 3 years ago
3
dbCAN URL update

#31 laxeye closed 3 years ago
1
databases: specify location

#30 nick-youngblut closed 3 years ago
2
UnicodeDecodeError: 'ascii' codec can't decode

#29 martian-yan closed 3 years ago
1
Update genemarkS2.py

#28 AaronRuben closed 4 years ago
0
Update .gitignore

#27 ytanizaw closed 4 years ago
0
Added options to enable GeneMarkS2, Diamond, RNAmmer

#26 nigyta closed 4 years ago
0
GeneMarkS-2

#25 AaronRuben closed 4 years ago
1
DFAST-core get a KeyError: 'WP_010895684'

#24 ywangbio opened 4 years ago
5
Fix tRNAscan command w/ bash-supported syntax

#23 standage closed 4 years ago
0
DFAST cannot predict the dnaA gene in a bacterial genome

#22 ywangbio closed 4 years ago
6
Issues with trnascan-se after no-internet install

#21 standage closed 4 years ago
5
modification configs for running rnammer

#20 aistBMRG closed 4 years ago
12
bug fix in merge CDS

#19 hunter-cameron closed 4 years ago
1
ORF calling & OrthoSearch

#18 YiJessePi closed 3 years ago
3
missing reference in pseudogene detection

#17 maximilianpress closed 4 years ago
10
Bioconda package?

#16 tseemann closed 4 years ago
2
Error during reference download

#15 gdefazio closed 5 years ago
3
Error running dfast -- Barrnap and Time::Piece

#14 yyan823 closed 5 years ago
1
Mac OS X 10.14.4 complains that mga is not adapted

#13 flandrs closed 5 years ago
2
error while trying to run dfast -- rpsblast

#12 jeagull closed 5 years ago
4
16S and 23S are sometimes not reported

#11 dgg32 closed 5 years ago
4
Error while trying to run dfast -- Barrnap and time-piece related

#10 matrs closed 5 years ago
3
information about some fields in the "attribute" column (GFF)

#9 matrs closed 5 years ago
3
Update descriptions for WP proteins.

#8 nigyta opened 6 years ago
0
Overlapping features

#7 nigyta opened 6 years ago
0
ambiguous tRNA

#6 nigyta opened 6 years ago
0
Problem running test with python3

#5 seth-1 closed 6 years ago
3
Nucleotide ambiguity codes in the FASTA file

#4 nigyta opened 6 years ago
0
GenBank-format file as an input

#3 nigyta closed 6 years ago
1
Fixed a typo in DFAST web service URL.

#2 nakao closed 6 years ago
1
Reference database for Archaea

#1 nigyta closed 6 years ago
1