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Hi All,
I'd like to add my iCLIP and 4C pipelines from CGAT Projects 28 and 14 to the repository and integrate them with the testing framework. What do I need to do to do this?
In addition both pip…
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i think it failed at run_ataqc.py i have the bigwig and narrowpeak files output already
i put the log here if somebody could take a look. thank you very much
the error is at the very end
this is …
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I tried subbing in the script from `pipelines/tools` that sounds like it could've been a substitute for the `spp` tool referenced in the pipeline config file's `tools` section, but when I look at the …
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Peak calling in open_pipelines/chipseq.py was not working. It turns out that there are a couple of issues to be corrected. Here are my solutions.
1-) In open_pipelines/chipseq.py (line 535), an und…
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This Git issue will track the needs and changes to the environment from a CentOS 7 system.
Several "system" versions of tools are updated in CentOS 7 and may obsolete some module needs.
As I prepa…
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Hi,
I have been running a few ATAQ files through your pipeline and all of them have run with no errors but one sample with 2 technical replicates, here is the command i have used
bds_scr D24 at…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/federicogiorgi/vulcan
Confirm the following by ed…
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Fatal error: TF_chipseq_pipeline/modules/align_bwa.bds, line 87, pos 3. Task/s failed.
chipseq.bds, line 76 : main()
chipseq.bds, line 79 : void main() { // chipseq pipeline starts here
chipseq.bds…
rdali updated
7 years ago
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Post your lay and scientific abstracts below. Aim for a maximum of 250 words for both. Thanks!
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CoGe is a genomics pipeline developed by @mbomhoff and @elyons.
Following the Dec 11 2015 standards committee meeting, CoGe can provide the pipeline defined in terraref/reference-data#19 as well as…