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Hi,
I used paired end datasets in bwa-mem, CIRI and finally to sailfish. I didn't experienced any problem generating data before, but for some reason, I got problems when handling a particular datas…
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Hi Alex,
@alexdobin
I have an error of STAR for single-end mRNA RNA-seq.
(QuantSeq 3' mRNA-Seq Library Prep Kit FWD)
I found the code from the web https://www.lexogen.com/quantseq-data-analysis/…
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I am very interested in your project .But how to train the 'circRNA2Vec_model' by myself? Can you provide the corresponding code ?Thank you! I'm looking forward for your reply .
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* **Term to be merged: Provide GO ID and term label**
cap-dependent translational initiation
GO:0002191
* **Which term do you propose this term merge into? Provide GO ID and term label**
cytopla…
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I am getting the following error when running data with human genome and the gtf file with circbase bed file.
```
== 10:33:39-Nov-06-2021 == [Mapping] Mapping consensus sequence to genome done!
=…
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Dear Author,
I hope this message finds you well. I recently came across your code repository on GitHub and found the get_similarity_matrix.py file to be of great interest to me. As a novice in this f…
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Hi,
thanks for this interesting tool. I am current trying to get ularcirc to run with some of my data.
Unfortunately, the reference genome for alignments don't match the UCSC chromosome naming…
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I got this error:
`
-1 SID16111_S6_L001_R1_001.fastq.gz -2 SID16111_S6_L001_R2_001.fastq.gz
Traceback (most recent call last):
File "/home/serbe204/anaconda3/envs/CIRI/bin/CIRIquant", line 5, …
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### Description of feature
Some candidates:
```[tasklist]
### Tasks
- [ ] https://github.com/nf-core/circrna/issues/139
- [ ] https://github.com/nf-core/circrna/issues/140
- [ ] https://gith…
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I run this tool on SLURM based cluster using PE data. But, on the analysis stage, I alway got an error described below:
`globalCutOff` was not defined?
I checked the ```filterFDR.py``` script, and…
BioWu updated
4 years ago