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```
I am using forester_1030.jar
According to
http://www.phyloxml.org/documentation/version_1.10/phyloxml.xsd.html#h-853091232
, I should be able to set Id (i.e. identifier) for Phylogeny, Clade and…
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Please check path to "splits" definition.
In this error, it is not clear what is meant by splits file.
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I posted my problem on stack overflow and a user suggested that it was because of a bug. https://stackoverflow.com/questions/73517862/is-there-a-way-to-highlight-multiple-clades-of-an-unrooted-phyloge…
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Nextclade now breaks down Nextstrain clades into year-letter and WHO, and only gives the "old" 'full' name in a new column, `clade_legacy`.
Example:
Old: `clade_nextstrain` == `22F (Omicron)`
N…
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On the Edges tab, we could show the number of descendants for an edge, in the way that we do for mutations. (@fbaumdicker, do correct me if I have not understood your suggestion correctly!)
As @jero…
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@corneliusroemer experimented with [IQ-TREE's constraint tree option](http://www.iqtree.org/doc/Advanced-Tutorial#constrained-tree-search) to prevent IQ-TREE from putting clades in the wrong place for…
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### Author(s) of proposal
Li-Yaung Kuo
### Name of taxon
Microschizaea
### Rank of taxon
Genus
### Approximate number of species affected
7
### Description of change
Additionally recognizing …
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I'm running this example code to use geom_hilight :
library(ggtree)
set.seed(102)
tree
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Hi,
I would like to plot a subclade of a large phylogenetic tree using ggtree. The `viewClade()` function is supposed to do the job, but it gives unexpected results when applied to a phenogram styl…
AEgit updated
4 years ago
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```
What steps will reproduce the problem?
1. Run a MrBayes mcmc including a taxon constraint that contradicts a grouping
found in the maximum likelihood tree
2. Open the resulting .run1.t file
3. Dr…