YuLab-SMU ggtree issues

YuLab-SMU / ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

https://yulab-smu.top/treedata-book/

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issues

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geom_hilight

#621 drdna opened 1 day ago
3
Can not find function getsubtree

#620 ShangLiii opened 6 days ago
1
No "read.r8s"

#619 WXwangxia opened 2 weeks ago
2
ggtree adds unexpected branch/node

#618 Edouard94 opened 1 month ago
1
Sorting Problem of Evolutionary Leaf Node Labels//咨询进化树叶节点的排序问题

#617 shenzhenzth opened 1 month ago
3
mv %<+% to ggfun

#616 xiangpin closed 1 month ago
0
geom_taxalink error "as_string() Can't convert `NULL` to a string."

#615 ammaraziz opened 1 month ago
2
chunky resolution of circular tree segments

#614 ulo opened 1 month ago
0
theme_tree2 scale bar width

#613 cabraham03 opened 2 months ago
0
无法正常绘制layout = "equal-angle"的tree

#612 SeanZhi opened 3 months ago
0
Expose position argument for `geom_range()`

#611 willgearty closed 3 months ago
0
Same name on one tree (2 copies), add links to another tree problem

#610 jianshu93 opened 3 months ago
0
Problems with Collapse function

#609 nedwalsh opened 3 months ago
0
Basic functionality missing from ggtree

#608 drdna opened 3 months ago
0
geom_highlight compresses the tree slightly

#607 maxfarrell opened 4 months ago
0
Fix #582 Update DESCRIPTION

#606 gavin-kelly-1 closed 4 months ago
0
geom_hilight rectangle unreasonably long

#605 ETaSky opened 4 months ago
0
facet_plot will not plot correctly align to branch in ggtree

#604 cms72 opened 4 months ago
0
geom_cladelab doesn't facet

#603 dansmith01 opened 4 months ago
0
Tree tips not colored according to specified colors

#602 JakobDrumm opened 5 months ago
2
rect_to_poly issue

#601 GuangchuangYu opened 5 months ago
9
Unwanted white lines between tiles in gheatmap layout circular/fan

#600 ruthvikpsi opened 5 months ago
0
Error with geom_inset of nodepies onto circular/radial/fan trees

#599 ruthvikpsi opened 5 months ago
0
layout_dendrogram and theme_tree2 are incompatiable

#598 SamPassmore closed 5 months ago
1
Issue with linear tree with only one parent and one

#597 haochenz96 opened 5 months ago
0
Request to add roundrect.r option to layout.params

#596 n8layman opened 6 months ago
1
ggtree not able to produce emojis in color

#595 sophiaaredas opened 7 months ago
0
'cophyloplot' equivalent function

#594 Puriney closed 7 months ago
2
Collapsing clade in circular layout gives curved min/max/mixed triangles

#593 AroneyS opened 9 months ago
0
colour of scale_alpha_continuous

#592 MjelleLab opened 9 months ago
0
Add geom_hilight for phyla.

#591 MjelleLab opened 9 months ago
0
HMP_tree raw data? availability

#590 MjelleLab opened 9 months ago
1
Coarse arc segmentation with circular layout

#589 alephreish opened 10 months ago
0
multiple ggtree functions error with "could not find function "offspring.tbl_tree_item""

#588 nelsonruth11 closed 10 months ago
6
Phylopic image background is coloured when using circular tree layout

#587 dr-budd closed 10 months ago
2
How to get the node number

#586 Ruiqi-CUB opened 10 months ago
1
geom_hilight does not highlight the whole clade

#585 BioinfoNovice opened 10 months ago
4
Scale on the y-axis in a tree rotated with 'layout_dendrogram()'

#584 gvaleman opened 10 months ago
1
Explicit handling of treetime outputs

#583 uee9 opened 10 months ago
0
when installing via renv or pak, it sometimes will try to pull treeio from github.com (not from bioconductor)

#582 idavydov closed 4 months ago
0
Error running drop.tip example

#581 pedur1 closed 11 months ago
1
use check_installed to check whether the suggenst pkg is installed

#580 xiangpin closed 11 months ago
0
updata according to the function migrate of tidytree

#579 xiangpin closed 11 months ago
0
suppress the warning message about check tbl_tree object in tidytree

#578 xiangpin closed 11 months ago
0
Warnings generated by normal use of ggheatmap function

#577 AlexSCFraser opened 11 months ago
1
Remove Remotes dependency

#576 AlexandreGuinaudeau closed 4 months ago
2
error in facet_plot():invalid tbl_tree object. Missing column: parent,node.

#575 Avamost1 opened 11 months ago
1
supporting linewidth and size in geom_tree

#574 xiangpin closed 12 months ago
1
Cafe analysis

#573 Rhia15 opened 1 year ago
0
Heatmap colors are showing transparent when alpha is not used

#572 ireneortega opened 1 year ago
1