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When I have a dendrogram catalog linked via the structure ID to the dendrogram file (including image), the structures selected in the plot only highlight in the image if one of the plot axes is the li…
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**Describe the bug**
This was reported at https://stackoverflow.com/q/76226275/695132
`cluster_leading_eigen()` produces a `merges` matrix in which the indices refer to clusters, not vertices. H…
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`colRow` not used.
``` R
d3heatmap(mtcars, scale="column", colors="Blues",labRow=as.character(mtcars$mpg),colRow=paste0(colnames(mtcars),"_test") )
```
`labRow` also ignored.
``` R
hcl_row
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I am using Dendrogram viewer, but I'm having problem with the display of the vmin and vmax values. The values of vmin and vmax are approx. -2e-5 and and 145e-6, but the window only display 0.00 and 0.…
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Is there an example how use ete with scipy.cluster.hierarchical?
I would like to plot a dendrogram, but I am not sure how to convert the scipy output into ete format.
```
def plot_dendrogram(
…
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from scipy.cluster.hierarchy import linkage,dendrogram
from scipy.cluster.hierarchy import fcluster
**_linkage 인스턴스생성_**
Z = linkage(x_data, **method='ward'**)
### method 종류
- single, compl…
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**Hi,
I used inferCNV 1.14.0 to infer the copy number variationsof two datasets. However, the dendrogram on the left panel looks strange. when I use the old version inferCNV1.6, everything goes w…
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- [] clustering adjacency with the dendrogram on the borders
- [] left/right adjacency
- [] axon/dendrite adjacency
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Since this seems to be a known limitation, this might be a duplicate of #22. On the other hand, as mentioned in #288, some support for text labels seems to have been added on master, and for the plot …
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Dendrogram segfaults on data with a lot of duplicate rows. The example works for 10 000 rows.
### Reproducing code example:
```
import sys
import numpy as np
from scipy.cluster.hierarchy import…